These are chat archives for dereneaton/ipyrad
export PYTHONNOUSERSITE=Truein the session I was running the analysis.
@StuntsPT This is what I suspected. The raw_fastq_path must be a directory. The directory optionally can contain ungzipped fastq files or gzipped fastq files, but it must be a directory that contains these. I think there was a little confusion about what deren had suggested. Is Qsuber.fastq.gz the raw data? If so you can 'mkdir raws' then 'mv Qsuber.fastq.gz raws/Qsuber_R1_.fastq.gz' then use './raws/*.fastq.gz' for this parameter.