These are chat archives for dereneaton/ipyrad

Jun 2018
Jun 12 2018 10:10
Hi @isaacovercast , glad I can help...
Another thing, this morning I was trying to run some abba-baba analysis with an old (few months) code but now I was not able to reroot the tree (the tree would not be changed but the command would react to forbidden request == paraphyletic outgroup) with the newest version of toytree (0.1.6) after playing around and downgrading to version 0.1.4 I got it running. Maybe something went wrong with the new one??
Jun 12 2018 13:44

But I am now stuck with an error while trying to run the abba-baba analysis

IPyradError                               Traceback (most recent call last)
<ipython-input-29-bebf901c7cd9> in <module>()
    476 ## run the tests
--> 477
    478 aa.results_table.to_csv("new_abba_baba.csv", sep="\t")

/home/dumortier/miniconda2/lib/python2.7/site-packages/ipyrad/analysis/baba.pyc in run(self, ipyclient)
    120             An ipyparallel client object to distribute jobs to a cluster.
    121         """
--> 122         self.results_table, self.results_boots = batch(self, ipyclient)
    123         self.results_table.nloci = np.nan_to_num(self.results_table.nloci)\
    124                                                  .astype(int)

/home/dumortier/miniconda2/lib/python2.7/site-packages/ipyrad/analysis/baba.pyc in batch(baba, ipyclient)
    276                 if not asyncs[job].successful():
    277                     raise IPyradWarningExit(\
--> 278                         " error: {}: {}".format(job, asyncs[job].exception()))
    279                 ## enter results for successful jobs
    280                 else:

/home/dumortier/miniconda2/lib/python2.7/site-packages/ipyrad/assemble/util.pyc in __init__(self, *args, **kwargs)
     50     def __init__(self, *args, **kwargs):
     51         if ipyrad.__interactive__:
---> 52             raise IPyradError(*args, **kwargs)
     53         else:
     54             SystemExit.__init__(self, *args, **kwargs)

IPyradError:  error: 0: ImportError(cannot import name demultiplex)

Any ideas?