These are chat archives for dereneaton/ipyrad

11th
Jul 2018
spirospapakostas
@spirospapakostas
Jul 11 2018 07:30
@isaacovercast @dereneaton Any explanation why, all beign equal, a "denovo+reference" assembly results to >90% of markers beign dropped compared to a simple "denovo" assembly? At first glance, it may be the quality of the assembly to blame, but according to the manual whatever information not used in the reference assembly is then used in the de novo aspect of the assembly. I am thus a bit puzzled here.