These are chat archives for dereneaton/ipyrad

Jul 2018
Yuliet Acevedo
Jul 13 2018 20:38

HI @isaacovercast. I have been successfully using ipyrad in a cluster but now I am getting this error:
/home1/05320/yulietag/miniconda2/lib/python2.7/site-packages/ipyparallel/client/ RuntimeWarning:
Controller appears to be listening on localhost, but not on this machine.
If this is true, you should specify Client(...,sshserver='you@nid01215')
or instruct your controller to listen on an external IP.


ipyrad [v.0.7.28]

Interactive assembly and analysis of RAD-seq data

New Assembly: sample43
Traceback (most recent call last):
File "/home1/05320/yulietag/miniconda2/bin/ipyrad", line 11, in <module>
load_entry_point('ipyrad==0.7.28', 'console_scripts', 'ipyrad')()
File "/home1/05320/yulietag/miniconda2/lib/python2.7/site-packages/ipyrad/", line 583, in main
ipyclient = ipp.Client(profile=args.ipcluster)
File "/home1/05320/yulietag/miniconda2/lib/python2.7/site-packages/ipyparallel/client/", line 512, in init
self._connect(sshserver, ssh_kwargs, timeout)
File "/home1/05320/yulietag/miniconda2/lib/python2.7/site-packages/ipyparallel/client/", line 631, in _connect
raise error.TimeoutError("Hub connection request timed out")
ipyparallel.error.TimeoutError: Hub connection request timed out.