These are chat archives for dereneaton/ipyrad

26th
Jul 2018
Isaac Overcast
@isaacovercast
Jul 26 2018 16:08
That's a generic error message that just means the ipa.structure call can't find the binary. Did you make sure the structure binary is in your $PATH?
tommydevitt
@tommydevitt
Jul 26 2018 16:24
I did export PATH=$WORK/Applications/structure:$PATH
LinaValencia85
@LinaValencia85
Jul 26 2018 18:04
@isaacovercast I am currently having an issue running s6 denovo. I get the following error
'''
Step 6: Clustering at 0.85 similarity across 3 samples
[####################] 100% concat/shuffle input | 0:00:04
[####################] 100% clustering across | 0:07:40
[####################] 100% building clusters | 0:00:03
[####################] 100% aligning clusters | 0:00:15
Encountered an error (see details in ./ipyrad_log.txt)
Error summary is below -------------------------------
error in step 6 IndexError(boolean index did not match indexed array along dimension 0; dimension is 246 but corresponding boolean dimension is 245)
'''
However, when I check my stats results and output files the consensus reads were generated successfully. Not sure whats going on.
LinaValencia85
@LinaValencia85
Jul 26 2018 19:07
Off course s7 doesn't work :)