These are chat archives for dereneaton/ipyrad

Jul 2018
Jul 30 2018 07:25
Hi again, any idea of how to modify the .json file to be able to work for step 3, 4, 5, 6 and 7 on demultiplex files from different directories (i.e. step 1 and 2 had run seperatly for those files)?
Jul 30 2018 15:45

@isaacovercast Thanks. Is the syntax for the ipyrad.plotting module current in the docs? I tried

import ipyrad.plotting as iplot
canvas = iplot.depthplot(all_samps)

But got

AttributeErrorTraceback (most recent call last)

<ipython-input-10-75663078c104> in <module>()
6 import ipyrad.plotting as iplot
----> 7 canvas = iplot.depthplot(all_samps)

AttributeError: 'module' object has no attribute 'depthplot'

Isaac Overcast
Jul 30 2018 15:46
@Alice85809572_twitter You should use the merge command to join assemblies
In general it is very dangerous to edit the .json file by hand, unless you really know what you're doing or unless you want the assemblies to break ;p
Isaac Overcast
Jul 30 2018 15:58
@tommydevitt The plotting module is somewhat 'beta', so it looks like the API is out of sync with reality. iplot.coverageplots.depthplot is where this function lives now, but I haven't tested it, so ymmv.
Jul 30 2018 15:58
@isaacovercast gotcha, thanks.