These are chat archives for dereneaton/ipyrad

21st
Sep 2018
mcfaddenlab
@mcfaddenlab
Sep 21 2018 18:32
Regarding abba-babba tests. I have a 5 taxon tree ~6000 loci. I added constraints for a few taxa in the tree and it generated ~2500 tests. , I tried running these tests, and am getting results in which all tests are "0". any advice? thanks!
Screen Shot 2018-09-21 at 11.30.58 AM.png
mcfaddenlab
@mcfaddenlab
Sep 21 2018 19:28
Also regarding abba-babba tests, is it ok to have missing data in the .loci file? and can the output .loci file from pyrad (not ipyrad) be used?