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Interactive assembly and analysis of RAD-seq data sets
Sep 21 2018 18:32
Regarding abba-babba tests. I have a 5 taxon tree ~6000 loci. I added constraints for a few taxa in the tree and it generated ~2500 tests. , I tried running these tests, and am getting results in which all tests are "0". any advice? thanks!
Sep 21 2018 19:28
Also regarding abba-babba tests, is it ok to have missing data in the .loci file? and can the output .loci file from pyrad (not ipyrad) be used?