These are chat archives for dereneaton/ipyrad
This may be something I am overlooking, but I am unable to get through Step 3 (am working from an HPC environment. Steps 1 & 2 worked fine, but I receive the following error for step 3:
IPyradError(vsearch v2.0.3_linux_x86_64, 15.5GB RAM, 32 cores
Reading file /dev/stdin 100%
310391941 nt in 2145951 seqs, min 35, max 145, avg 145
Thanks in advance for any suggestions!
-dflag and post the last several lines of the ipyrad_log.txt file? Also, it could just be a simple resource allocation issue. It seems you have 15GB of ram and 32 cores, but we recommend 4GB of ram per core, for normal operation.