These are chat archives for dereneaton/ipyrad

Oct 2018
Megan Smith
Oct 03 2018 18:13
Thanks @eaton-lab . It doesn't seem like it did this...maybe because it had already gotten to the point where it had removed some of the temp directories?
Oct 03 2018 20:13

Hello everyone,

I performed two separate runs with PYRAD. On the first one I used denovo assembly and on the second one I used denovo+reference. Both runs have the same parameters except the assembly method. Does it make any sense to get smaller values for “loci_in_assembly” when using denovo+reference compared to denovo?