These are chat archives for dereneaton/ipyrad

12th
Oct 2018
AliceLedent
@AliceLedent
Oct 12 2018 15:03
Hi, is there a minimum length (in bp) for the reads to be processed by ipyrad? I ran Cutadapt before ipyrad with a min length of 1 and since then ipyrad can't complete step 3. Thank you!
mcfaddenlab
@mcfaddenlab
Oct 12 2018 23:08
plot2.pdf
hi there, i am curious on interpreting abba-babba results. this figure suggests, in test #4, admixture between the clade denoted by the black bar with that denoted by the orange bar. does this suggest that there is introgression from the black bar clade to the orange bar clade? or is there a follow up test to test for this? Based on other results, I expect introgression from the orange into the black clade. Thanks!