These are chat archives for dereneaton/ipyrad

16th
Oct 2018
Tom Barbette
@tbarbette
Oct 16 2018 09:32
Hey ! Can someone tell me the reason why the parallelism could not work well. Ie. increasing "-c" does not lead to much more core, while "-t" does. What limits the spreading of -c, ie ipyrad jobs?
Isaac Overcast
@isaacovercast
Oct 16 2018 16:52
@AliceLedent There haven't been any big changes at all recently. You can see all the recent changes in the release notes: https://ipyrad.readthedocs.io/releasenotes.html
@tbarbette Different steps make use of parallelization somewhat differently. -t indicates how many threads should be dedicated to vsearch clustering jobs in steps 3 and 6, whereas -c is the raw number of cores to throw at the assembly.