These are chat archives for dereneaton/ipyrad

29th
Oct 2018
tommydevitt
@tommydevitt
Oct 29 2018 15:44
@isaacovercast @dereneaton How would you like us to cite ipyrad in publication? Just a link to the GitHub?
Ibrahim Giles
@TavoIbrahim
Oct 29 2018 17:56
@eaton-lab Thank you so much!
Ibrahim Giles
@TavoIbrahim
Oct 29 2018 18:03
@eaton-lab On the other hand, I have had a problem during step 5 while I run ipyrad on a cluster. My log file show me this error message: IOError(Unable to create file (file locking disabled on this file system (use HDF5_USE_FILE_LOCKING environment variable to override), errno = 38, error message = 'Function not implemented')) I think it is related to the cluster's features but Im not pretty sure. I would be grateful If you could give me some instructions to solve this problem. Thank you in advance!
Isaac Overcast
@isaacovercast
Oct 29 2018 21:52
@tommydevitt The github repo is good, also some people use: Eaton, D. A. R., & Overcast, I. (2016). ipyrad: interactive assembly and analysis of RADseq data sets. The manu is 'in prep'.
Isaac Overcast
@isaacovercast
Oct 29 2018 21:57
@TavoIbrahim This is a well known problem with NFS filesystems. There's a fix documented on the ipyrad faq: https://ipyrad.readthedocs.io/faq.html#how-to-fix-the-ioerror-unable-to-create-file-ioerror-unable-to-create-file-error