These are chat archives for dereneaton/ipyrad

4th
Nov 2018
Simon Blaser
@SimonBL_gitlab
Nov 04 2018 14:43
Dear All.
I am currently analyzing a paired-end ddRAD-Seq data set from insect samples running ipyrad version 0.7.28. Thereby, steps 1-6 of the analysis work without troubles, but the 7th step is always interrupted showing the following error message:
"[Errno 16] Device or resource busy: '/home/bioinf/bioinf_data/50_BLSI/RAD-Seq/iPyrad/Index1-2/index1-2_outfiles/index1-2.loci.0'"
When using the top command to check for running processes, I can detect no process which could additionally try to access the specified file.
Does someone have an idea how I could solve this problem?
Many thanks for your help and best wishes,
Simon
Simon Blaser
@SimonBL_gitlab
Nov 04 2018 15:08

As a follow-up to be more precise: Here the exact context of the error message:

Step 7: Filter and write output files for 62 Samples
[####################] 100% filtering loci | 0:00:15
[####################] 100% building loci/stats | 0:00:06

Encountered an unexpected error (see ./ipyrad_log.txt)
Error message is below -------------------------------
[Errno 16] Device or resource busy: '/home/bioinf/bioinf_data/50_BLSI/RAD-Seq/iPyrad/Index1-2/index1-2_outfiles/index1-2.loci.0'