These are chat archives for dereneaton/ipyrad

9th
Nov 2018
AliceLedent
@AliceLedent
Nov 09 2018 09:04
@isaacovercast , sure, is this the address linked to your dropbox account: iovercast@gc.cuny.edu?
Alex Linan
@alx552
Nov 09 2018 16:26
@dereneaton and @isaacovercast I checked the toytree version and I am running v.0.1.6. I am not sure what kind of rule of thumb exists for how memory requirements scale for the number of taxa. I tried running just 400 quartets on a dataset consisting of 353 taxa on a node with 125gb of memory. The run failed after just 43 seconds during the "intial tree" calculation. So given that I am running the correct version of toytree, could memory be the issue given the number of taxa in my dataset or something else?