These are chat archives for dereneaton/ipyrad

Jan 2019
Tim Böhnert
Jan 22 09:58

Hi, after the workshop in Malaga I am now trying to run ipyrad via jupyter-notebook on our HPC. I was able to connect from my linux machine to the HPC as explained on the homepage and it seems working fine so far. But before I am going to process my own data I wanted to go through the Pedicularis example but got stuck right at the beginning. Ipyrad was already installed from previous analysis and everything worked fine (on CLI). For the tutorial I updated to the newest version together with the installation of toytree and the other packages as explained in the tutorial. At beginning where I import the packages I get the this error ...

## imports
import ipyrad as ip
import ipyrad.analysis as ipa
import ipyparallel as ipp

ImportError                               Traceback (most recent call last)
<ipython-input-16-a99cabc2dd5b> in <module>()
      1 ## imports
----> 2 import ipyrad as ip
      3 import ipyrad.analysis as ipa
      4 import ipyparallel as ipp

/home/boehnert/miniconda2/lib/python2.7/site-packages/ipyrad/ in <module>()
     19 ## main ip.functions
---> 20 from . import load as _load
     21 from . import assemble
     22 from ipyrad.core.parallel import get_client as _get_client

/home/boehnert/miniconda2/lib/python2.7/site-packages/ipyrad/load/ in <module>()
     12 ""
---> 14 from .load import test_assembly
     15 from .load import save_json
     16 from .load import load_json

/home/boehnert/miniconda2/lib/python2.7/site-packages/ipyrad/load/ in <module>()
     12 import ipyrad as ip
     13 from copy import deepcopy
---> 14 from ipyrad.assemble.util import IPyradWarningExit, ObjDict
     15 from collections import OrderedDict

/home/boehnert/miniconda2/lib/python2.7/site-packages/ipyrad/assemble/ in <module>()
      3 """ import assembly funcs """
----> 5 from . import demultiplex
      6 from . import rawedit
      7 from . import cluster_within

ImportError: cannot import name demultiplex

should I install an older version of ipyrad?
Thanks in advance!