These are chat archives for dereneaton/ipyrad

Feb 2019
Feb 03 15:37 UTC

Hi all,
At step 7 during my assembly I receive the error message after the filtering loci stage:
error in filter_stacks on chunk 442586: ValueError(zero-size array to reduction operation minimum which has no identity)

Looking at previous posts, I have tried changing my params file to help this. The error message occurs whenever my 'min_sample_locus' is >2 (i.e. step 7 works when this value is 2, but creates massive files with loci with little downstream use). I've tried changing max_Indels_locus and max_shared_Hs_locus to higher and higher values to with no luck. Has anyone seen/been able to solve this issue?