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    Camille Scott
    @camillescott
    russell and i last night trying to troubleshoot his software: "hang on, i need to chmod +x this binary blob i just downloaded from an unknown site"
    ahh, bioinformatics
    Kevin Murray
    @kdmurray91
    @camillescott hey, I didn't to curl| sudo sh, so it must be secure right -_-
    Kevin Murray
    @kdmurray91
    alias glola='git log --graph --pretty=format:'\''%Cred%h%Creset -%C(yellow)%d%Creset %s %Cgreen(%cr) %C(bold blue)<%an>%Creset'\'' --abbrev-commit --all'
    nano .bashrc
    paste the above line
    Daniel Chen
    @chendaniely
    thanks!
    Camille Scott
    @camillescott
    Running a tad late, had to walk
    jessicamizzi
    @jessicamizzi
    Tamer Mansour
    @drtamermansour
    is your mic is mute?
    jessicamizzi
    @jessicamizzi
    I don't think so, I think it is just difficult to hear because it is a big room and the mic is by lisa
    Tamer Mansour
    @drtamermansour
    I will share my questions here
    Does Lisa has the reference mapping rates from the previous study? Does she do the diginorm per sample or per species?
    what does the n_contigs_with_CRBB in the transrate table mean?
    Camille Scott
    @camillescott
    on ref mapping rates: yes, between 70 and 80 percent
    per species
    Tamer Mansour
    @drtamermansour
    This should exclude the possibility of contamination
    Camille Scott
    @camillescott
    number of contigs in the assembly with a conditional reciprocal best hit
    Tamer Mansour
    @drtamermansour
    no
    Camille Scott
    @camillescott
    to summarize our convo here: i'm quite confident that the low numbers are due to CRB not being robust in the face of high heterozygosity
    Tamer Mansour
    @drtamermansour
    does HaploMerger work for transcriptomes?
    Camille Scott
    @camillescott
    we don't know
    jessicamizzi
    @jessicamizzi
    aws workshop youtube link: https://www.youtube.com/watch?v=IFdBD3YdLJc&feature=youtu.be (materials in video description)
    jessicamizzi
    @jessicamizzi
    Tamer Mansour
    @drtamermansour
    Do not we have a lab meeting?
    starts at 2PM
    Tamer Mansour
    @drtamermansour
    thanks
    Michael R. Crusoe
    @mr-c
    You all have an OnHub router? eye-roll :-)
    Michael R. Crusoe
    @mr-c
    I can't hear
    Phillip Brooks
    @brooksph
    ?
    jessicamizzi
    @jessicamizzi
    Sorry Phil! We phailed you.
    Phillip Brooks
    @brooksph
    Gotta go to a another meeting. See you next week! :)
    jessicamizzi
    @jessicamizzi
    Link for lab meeting (starting at 1:15pm, I'm just running a tight ship in the absence of our fearless leader): https://hangouts.google.com/call/vys6c5ln4vcnfgasi6yzsw5ruie
    Camille Scott
    @camillescott
    Running just a few minutes late
    jessicamizzi
    @jessicamizzi
    Should we start without you, or will you be here soon?
    Luiz Irber
    @luizirber
    Luiz Irber
    @luizirber
    Camille Scott
    @camillescott
    lab meeting today or no?
    jessicamizzi
    @jessicamizzi
    pretty sure no b/c Titus and Lisa are building a barn
    Luiz Irber
    @luizirber
    Luiz Irber
    @luizirber
    Harriet Alexander
    @halexand
    Hey guys, I am having problems with internet
    On my end. Working to fix it. Sorry, Lisa!
    Luiz Irber
    @luizirber
    jessicamizzi
    @jessicamizzi
    is there are lab meeting today?
    C. Titus Brown
    @ctb
    No