maybe this is a nasty way to solve the problem ...(I m still beginner)
Requirement already satisfied: fury in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (0.3.0) Requirement already satisfied: scipy>=0.9 in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (from fury) (1.3.1) Requirement already satisfied: vtk>=8.1.0 in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (from fury) (8.1.2) Requirement already satisfied: numpy>=1.7.1 in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (from fury) (1.17.2)
@portokalh did it solve the issue ?
from dipy.viz import window, actor
@smasjoodi , you are still using python2.7 . However dipy 1.0 is compatible only with python 3.5+. so you need to update you anaconda version to have python3. For your information, python 2.7 end of life is January 1rst 2020 so in 3month so I advise you to update your environnment
@portokalh, if you are using anaconda, do not forget to activate your environment, otherwise, it will always be the default python installation on your mac
use: source activate base
and then you can use pip install
serge i am in py3.7.3 on terminal and 3.7.4 in jupyter and trying to synchronize those. why so many pythons?
tried to clean things up now it looks like i may need to reinstall anaconda: conda install python=3.7; gives //anaconda3/bin/conda: //anaconda3/bin/python: bad interpreter: No such file or directory
thanks @romainviard and @skoudoro all is well after reinstalling anaconda and dipy and reconciling the versions between jupyter and terminal! very grateful!
Is there a simple way to filter/select a subset of b-values within my dataset and gtable ? e.g. up to b<=2000
@Quantum_Neuron_twitter : yes, something like : idx = gtab.bvals<=2000; subset = data[..., idx]should give you a 4D array with data only from the bvals <=2000
ah great, thx Ariel
Hey!! Registration for DIPY Workshop 2020 is now open. Visit https://workshop.dipy.org for information about dates, program and accommodation.
Hope to see you all in Bloomington this March for the workshop. Last year the workshop was a blast and people evaluated with 5 to 5 stars overall.
:rocket: :star2: :heart_eyes:
:rocket: :heart: :rocket:
Bramsh Q Chandio
Hello, Can anyone help me? I have got the following issue while running the below command curl https://bootstrap.pypa.io/get-pip.py -o get-pip.py Issue: curl: (35) schannel: next InitializeSecurityContext failed: Unknown error (0x80092012) - The revocation function was unable to check revocation for the certificate.
N. B) The installation has not done due to the PC shut down, and while I run the command again I have got the mentioned issue curl: (35) schannel: next InitializeSecurityContext failed: Unknown error (0x80092012) - The revocation function was unable to check revocation for the certificate.
@Garyfallidis Im interested in the 2020 DIPY course, could you explain the difference between the 3 and 5 day course registration options? Is it as simple as 3 day includes days 1-3 and 5 day is days 1-5?
Yes, that is correct @kimberlylray
Hi DIPY team, I am interested in trying out the various reconstruction models for estimating diffusion using DIPY. May I know , what are the models which can be used for reconstruction in case of single shell DWI and is there any constraints to have higher b-values such as b=2000 for using any specific model? Thank you
Hey @rajikha : that is the topic of this long-languishing PR: nipy/dipy#1919
So there's some information there
@arokem Thank you
@Garyfallidis great, thank you!
Hi :) I want to use another metric - MAM. Can anyone help me how to substitute this measure into QuickBundles in Python?