These are chat archives for epnev/ca_source_extraction
Matlab implementation of a source extraction and spike inference algorithm for large scale calcium imaging data analysis, based on a constrained matrix factorization approach.
hey Epnev, I tried modified read_file so that it takes .btf files as well (just added another || strcmpi(ext, 'ext') at that condition when it's checking the file extension), and the loadtiff function that it uses works fine with .btf. I dont know if big tiffs is a common format for any of your user-base, but if it is, might be worth adding.
also, for file sequences, I see you have this function 'memmap_file_sequence' -- which demo script would that be best used with? the class-based one, maybe?