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  • Nov 15 2018 17:56
  • Oct 12 2018 01:00
    uribo starred expfactory/expfactory
  • Sep 29 2018 13:39
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  • Aug 27 2018 21:19

    vsoch on docs

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  • Aug 27 2018 21:17

    vsoch on master

    adding image back Merge branch 'master' of github… adding remainder of images and 1 more (compare)

  • Aug 27 2018 21:10
    vsoch closed #116
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    vsoch opened #116
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    vsoch on docs

    adding remainder of images (compare)

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    vsoch on docs

    Merge pull request #115 from ex… adding image back Merge branch 'master' of github… (compare)

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    removing a toooon of docs Merge pull request #115 from ex… (compare)

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    vsoch on docs

    removing a toooon of docs (compare)

  • Aug 16 2018 18:04
    vsoch commented #76
  • Aug 16 2018 18:02
    earcanal commented #76
  • Aug 15 2018 13:52

    vsoch on master

    Update surveys.md Checkboxes i… Merge pull request #114 from ea… (compare)

  • Aug 15 2018 13:52
    vsoch closed #114
  • Aug 15 2018 13:14
    earcanal opened #114
  • Aug 09 2018 13:11
    vsoch commented #113
  • Aug 09 2018 10:12
    earcanal commented #113
Vanessasaurus
@vsoch
docker pull vanessa/expfactory-builder:base
earcanal
@earcanal
I spelled it correctly when I pulled it ;-)
is it different if I pull ...:base?
Vanessasaurus
@vsoch
So here is what happens - you need to generate the recipe again
yes there are two containers
show me the command you use to generate the dockerfile first
something like $ docker run -v $PWD:/data vanessa/expfactory-builder build test-task
you'll need to run that first
earcanal
@earcanal
docker run -v $HOME/study7:/data \
              vanessa/expfactory-builder \
              build test-task \
              --input build/docker/Dockerfile.https
Vanessasaurus
@vsoch
yep exactly right!
earcanal
@earcanal
That's how I did it originally, but I've been copy/pasting that recipe around for a while and manually editing the experiment section.
Vanessasaurus
@vsoch
Now check out the Dockerfile - it's different by one line
RUN python3 -m pip install pyaml pymysql psycopg2==2.7.5
earcanal
@earcanal
ah, ok
Vanessasaurus
@vsoch
You can't use the Dockerfile you posted above
earcanal
@earcanal
ideal
Which line should I paste it after in the above Dockerfile?
Vanessasaurus
@vsoch
You can't just run the command to generate it agian?
Just replace RUN python3 -m pip install pyaml pymysql psycopg2 with RUN python3 -m pip install pyaml pymysql psycopg2==2.7.5
earcanal
@earcanal
My laptop is off at the moment and is seriously running on fumes.
When I switch it on I need to tweak the Dockerfile and try to build as quickly as possible!
^^ OK
Vanessasaurus
@vsoch
lol ok
earcanal
@earcanal
cracks knuckles
Vanessasaurus
@vsoch
rofl
have you published any papers yet?
Don't forget to cite expfactory, so I can show it's helping people and justify the work
earcanal
@earcanal
about to start writing one
will do!
build got past postgres this time :)
remaining issues are mine
Vanessasaurus
@vsoch
good to hear
earcanal
@earcanal
resolved
shiny new container built :)
thanks again for rapid response. I should be able to do final testing tomorrow morning after refuelling my laptop!
Vanessasaurus
@vsoch
you're welcome
Vanessasaurus
@vsoch
@yarikoptic it might be your lucky day, no promises about timing, but I'm looking into if Google Cloud Build is comparative (cost wise) to handle running the builds, which means more ability to select singularity versions and also fewer issues with larger repos.
Yaroslav Halchenko
@yarikoptic
Hi Vanessa! Is there a programmatic way to obtain a list of images for a collection on singularity hub? I see https://github.com/tanhnhn/singularityhub-sregistry/blob/1b8737e66e9205b9c5031f9144a1e76c0807e8dc/shub/apps/api/templates/routes/api.html#L15 which mentions /sitemap.xml but there is no https://singularity-hub.org/sitemap.xml
Vanessasaurus
@vsoch
Not anymore.
All non essential API endpoints were removed.
Yaroslav Halchenko
@yarikoptic
oh... so to see if an image was built I have to scrape collections page?
Vanessasaurus
@vsoch
You can use the GitHub webhooks API, or go to the page, sure.
Yaroslav Halchenko
@yarikoptic
webhooks on github get notified when an image finished building?
Vanessasaurus
@vsoch
No it would just alert that it received
Yaroslav Halchenko
@yarikoptic
so there is no way to discover that image finally finished building then... even with scraping not trivial since collection status webpage is populated by JS
Yaroslav Halchenko
@yarikoptic
eh, even phantomjs hacky way to obtain the page (https://askubuntu.com/a/547126) didn't work for me. So it seems there is no longer any way to see if image was built (or errorred) besides looping the trying to fetch the image for a while.
Yaroslav Halchenko
@yarikoptic
on https://singularity-hub.org/collections/2761 I am trying to remove ReproNim/containers:bids-afni-proc--v0.0.2 (should be the last one if you sort by date as of the moment) but nothing happens. When I try to remove next one - dialog appears asking to confirm that and I can remove (but not that first one).
Also after removing sorting resets, so I have to reorder again manually
Yaroslav Halchenko
@yarikoptic
hm... later was able to remove that and other images
Yaroslav Halchenko
@yarikoptic
what have I done to deserve a multi-hour throttling? https://github.com/datalad/datalad-container/issues/103#issuecomment-532250564