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Repo info
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  • 04:04

    ctrueden on master

    POM: update parent to pom-scija… (compare)

  • Jul 09 17:29
    lollopus edited #253
  • Jul 09 15:52
    imagesc-bot commented #253
  • Jul 09 15:48
    lollopus opened #253
  • Jul 07 12:47
    ctrueden assigned #252
  • Jul 07 12:47
    ctrueden opened #252
  • Jul 07 12:46
    ctrueden commented #221
  • Jul 01 13:31
    tinevez opened #121
  • Jul 01 13:25

    tinevez on reshuffle-packages

    Reshufle packages of the main c… Reshuffle the test classes. Fix javadoc errors and warnings. (compare)

  • Jun 24 16:36
    imagesc-bot commented #223
  • Jun 24 13:13
    hinerm commented #240
  • Jun 23 20:36
    imagesc-bot commented #240
  • Jun 23 20:12
    ctrueden commented #240
  • Jun 23 20:11
    ctrueden commented #240
  • Jun 23 20:05
    hinerm commented #240
  • Jun 23 16:21
    ctrueden assigned #240
  • Jun 19 13:04
    imagejan closed #156
  • Jun 19 13:03
    imagejan commented #156
  • Jun 16 11:23

    tinevez on fix-track-color-min-max

    Fix setting min & max for PerTr… (compare)

  • Jun 08 21:45
    acardona commented #250
Jan Eglinger
@imagejan
Since you changed it fiji/View5D@f5b7bfa already: de-activate on travis-ci.org, activate the repo on travis-ci.com, and run travisify.sh (from scijava-scripts) again.
(You likely require to have the maven.scijava.org credentials from @ctrueden and be logged into travis-ci.com from the travis CLI client.)
Jean-Yves Tinevez
@tinevez
I fail with the migration to travis-ci.com
can you help me with it?
Jean-Yves Tinevez
@tinevez
Rainer would like to have upload rights on java-8 so that he can upload newest version of View5D. Is this ok?
Jan Eglinger
@imagejan
@tinevez I ran travisify.sh on the current master and pushed to fiji/View5D, but it doesn’t seem to get picked up by travis-ci.com yet.
Jean-Yves Tinevez
@tinevez
Thanks Jan
Jan Eglinger
@imagejan
@tinevez update: I tried to migrate View5D within Travis from .org to .com, which now moved the build history to travis-ci.com as well. Unfortunately no new build was triggered yet, however. Maybe a new push to master will now be fine and trigger a new build on travis-ci.com.
Curtis Rueden
@ctrueden
I don't understand why View5D needed to migrate from travis-ci.org to travis-ci.com.
We have not established a general process for doing that yet. As you have seen, it is not straightforward.
As for Java-8 upload rights: if this is a one-time upload, I would prefer someone else who already has upload rights just upload it.
Jean-Yves Tinevez
@tinevez
Sorry for 1) Ok for 2)
I thought it was the right thing to do
Curtis Rueden
@ctrueden
@tinevez No worries—I hope that didn't come across too harshly. Migrating to travis-ci.com is certainly the right thing to do eventually. If it were as easy a pushing a button per repository, I'd say we should just do it now. Ideally, all our stuff would use travis-ci.com now, since that's what the Travis team wants everyone moving toward. (Although even more ideally, perhaps we should be moving everything away from Travis CI toward GitHub Actions? Worth exploring for sure, but not urgent...)
Igor Pisarev
@igorpisarev
Hi @ctrueden, are there any plans to update BigDataViewer in Fiji to version 9.0.0+? (the one with the updated UI and new side panel)
Priority 1.
Igor Pisarev
@igorpisarev
I see -- great, thanks!
Curtis Rueden
@ctrueden
I wanted to have it done by end of this week, but sadly we won't quite get there. But hopefully before mid-July.
Jan Eglinger
@imagejan
The Fiji update site seems to non-functional, see also this forum post. Any ideas anyone?
Slagt
@Slagt
Hi dev, I would like to anonymize an old bug reports from the legacy Fiji BugZilla bug tracking. Could anyone points me in the right direction? Who should I ask? Thanks!
Jan Eglinger
@imagejan
I guess it's @ctrueden who can change that. @Slagt what are your reasons for requesting anonymization? Fiji’s Bugzilla isn’t used any more since a while now.
Slagt
@Slagt
Thanks. My first and last name are in the bug report along side with a link pointing to my private website. I don't want people who google my name to find my private website. Back in 2014, I was hosting a plugin on my server for in-lab use, and someone submitted a bug report while using my plugin. I suppose the plugin information was automatically added to the report. I have only realized that now after I have been asked, during an interview, what sort of things I was hosting on my private website (mentioning the domain name).
Stephan Preibisch
@StephanPreibisch
Hi @ctrueden @tpietzsch, could you maybe please have a look here: PreibischLab/BigStitcher#75
Perf4j was recently removed, but formats-bsd depends on it and now things crash when using bio formats it seems
removed from the ImageJ update site I mean
Deborah Schmidt
@frauzufall
@imagejan I'll talk to Gaby tomorrow about the Fiji update site, she knows more about the server logs and also our backup.
Jan Eglinger
@imagejan
@StephanPreibisch Curtis is on vacation for a week. But the issue with perf4j might be caused by the bio-formats team uploading their latest updates. Maybe you can ask on the forum and mention @OMETeam as well...
Oh, actually, @haesleinhuepf might be right with his comment on the issue, and the non-functional Fiji update site is the culprit.
Nevertheless, if bio-formats depends on perf4j, it should also be served by the Java-8 update site, not only by ImageJ and/or Fiji.
Stephan Preibisch
@StephanPreibisch
Whoever fixed it, thanks a lot! :)
Curtis Rueden
@ctrueden
@Slagt I'm sorry, I don't have time to help you right now. Ping me again in a few days.
Slagt
@Slagt
@ctrueden Sure, will do. Thanks.
NicoKiaru
@NicoKiaru
Does somebody have a working FIJI with labkit on windows that could be uploaded somewhere ? ping @maarzt and @frauzufall I'm in the middle of a course and I'd like to demo it ...
Deborah Schmidt
@frauzufall
@NicoKiaru I will build you one, one moment
Deborah Schmidt
@frauzufall
NicoKiaru
@NicoKiaru
You're the best!!
Deborah Schmidt
@frauzufall
hope it worked ^^
NicoKiaru
@NicoKiaru
Yep, it worked smoothly - and the interface is awesome now. But I now I have plenty of feature request ;-) maybe it's not the proper channel, where do you prefer that I reach you ?
Deborah Schmidt
@frauzufall
That's great! For Labkit @maarzt is the right person to contact, best by creating issues in https://github.com/maarzt/imglib2-labkit/ I would assume
Jan Eglinger
@imagejan
:eyes:
Curtis Rueden
@ctrueden
@SaeidehDavoodi_twitter Looks like a bug in Bio-Formats. Can you please make a post on forum.image.sc and tag it bio-formats and paste your exception and share a non-working image file? Thanks.
@imagejan @frauzufall I have also gotten the "your java is too old" message when it wasn't... if it happens again I'll try to debug into why it happens.
@imagejan Are you still having problems? Is there a particular URL of imagej.net that isn't working (due to the maintenance downtime) which I could restore such that the Updater is happy? (@frauzufall?)
Deborah Schmidt
@frauzufall
I don't know, upload and download worked fine for me a few days ago, would have to test again now (later)
Jan Eglinger
@imagejan
@ctrueden thanks I tested again yesterday and it worked (i.e. updating Fiji behind a proxy and only using http didn’t throw an error anymore).
Regarding the “your java is too old” message, in my case the explanation was straight-forward: the proxy setting was only for http (due to too old ij.jar), so the https connection was blocked, the updater couldn’t connect and was falling back to http, which triggered the false assumption that java was too old when it actually wasn’t.
Updating ij.jar to 1.53c helped in this case.
Curtis Rueden
@ctrueden
Thanks @imagejan for the info. I think it would make sense to change that message to only claim Java is too old when it's really too old. That is: we can actually check the java version and if it's known-to-be-new-enough, we can instead say something like "couldn't connect via HTTPS" instead.
IIRC the new-enough version is 1.8.0_101, or thereabouts.
Jan Eglinger
@imagejan
:+1: