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  • Jan 10 15:15

    tinevez on TrackMate_-5.2.0

    [maven-release-plugin] prepare … (compare)

  • Jan 10 15:15

    tinevez on master

    Bump to next development cycle … (compare)

  • Jan 10 15:13

    tinevez on label-img-exporter

    (compare)

  • Jan 10 15:13

    tinevez on master

    An action to export tracking re… Export label image: add methods… Export label image: add methods… and 4 more (compare)

  • Jan 10 15:13
    tinevez closed #147
  • Jan 10 15:04
    tinevez edited #147
  • Jan 10 14:59
    tinevez synchronize #147
  • Jan 10 14:59

    tinevez on label-img-exporter

    Export label image: add methods… Export to label image: options … Add a main method as a demo. and 1 more (compare)

  • Jan 10 08:12
    tinevez opened #147
  • Jan 10 08:08

    tinevez on label-img-exporter

    Export label image: add methods… (compare)

  • Jan 09 13:22

    tinevez on label-img-exporter

    An action to export tracking re… (compare)

  • Jan 09 12:11

    tinevez on label-img-exporter

    WIP: An action to export tracki… (compare)

  • Dec 26 2019 15:37
    ctrueden commented #223
  • Dec 26 2019 15:37
    ctrueden commented #223
  • Dec 23 2019 02:00
    hubutui commented #223
  • Dec 19 2019 16:40

    tinevez on master

    Finally, make Jet the default a… Bump to next development cycle … (compare)

  • Dec 19 2019 16:40

    tinevez on TrackMate_-5.1.0

    [maven-release-plugin] prepare … (compare)

  • Dec 19 2019 14:12
    tinevez commented #90
  • Dec 19 2019 13:52
    imagejan commented #90
  • Dec 19 2019 12:44

    tinevez on master

    Code style changes. Change the default TrackScheme … (compare)

Jean-Yves Tinevez
@tinevez
But can you prepare the announcement then?
Jan Eglinger
@imagejan
Yes, sure. For when did you plan the release?
Jean-Yves Tinevez
@tinevez
.... Friday?
John Bogovic
@bogovicj
Jan Eglinger
@imagejan
It works fine for me. A bit laggy in loading the css, though..
John Bogovic
@bogovicj
works for me now too
Ulrik Günther
@skalarproduktraum
@ctrueden i just spent some time making sciview work on hidpi displays with scaling applied. seems to work well now on windows and macos (haven't tested linux yet). however, this stuff working right is dependent on the jre exposing the surface scaling, which only works on java 9+ (bummer). but jetbrains to the help! they actually backported the fixes that expose the surface scaling right to java 8 (yay!). do you think there's a chance to ship that jre version with fiji? see https://confluence.jetbrains.com/display/IDEADEV/JetBrains+Runtime+Environment for details
Curtis Rueden
@ctrueden
@skalarproduktraum Yes, we could ship it... but does it also include JavaFX? In the near term, I need to update the shipped Java 8 for all platforms, to an OpenJDK 8 that ships JavaFX. The Zulu build is the only one I know that does that. But if the JetBrains fork has that, then that's awesome.
If they don't include JavaFX, it might be possible to rip out the JavaFX8 build from Zulu and paste it into the JetBrains one.
Philipp Hanslovsky
@hanslovsky
What's the reason for shipping JavaFX with Fiji? Unfortunately, mixing JavaFX and Swing/AWT performs very badly
Curtis Rueden
@ctrueden
I don't want to invest an enormous amount of time pursuing that, because switching to Java 11 addresses all. But if it's quick & easy, updating the bundled JRE 8 ASAP would be great.
There are plugins that are part of core Fiji that rely on JavaFX.
Philipp Hanslovsky
@hanslovsky
:plus1:
Ulrik Günther
@skalarproduktraum
@ctrueden excellent question, let me check
Curtis Rueden
@ctrueden
@hanslovsky Here are the ones I know about (not all part of core Fiji distro, but some are):
  • PreibischLab/multiview-reconstruction
  • cmongis/imagejfx
  • ctrueden/imagej-plugins-javafx
  • fiji-hpc/scijava-parallel
  • hadim/FilamentDetector
  • hanslovsky/scijava-repl-fx
  • ij-plugins/ijp-color
  • scijava/scijava-repl-fx
  • scijava/scijava-ui-javafx
Right now, if you download a fresh Fiji and run e.g. FilamentDetector on macOS, it won't work. :cry:
This is because I updated the macOS JRE bundle to AdoptOpenJDK, without realizing it didn't include JavaFX.
Ulrik Günther
@skalarproduktraum
@ctrueden so the jetbrains jdk/jre ships with jfxrt.jar
(i guess that's all that's needed)
Curtis Rueden
@ctrueden
@skalarproduktraum Awesome. From where can I download this amazing JDK?
Ulrik Günther
@skalarproduktraum
@ctrueden
Curtis Rueden
@ctrueden
With my amazing Googling skills I also found this link: https://confluence.jetbrains.com/display/JBR/JetBrains+Runtime
Jean-Yves Tinevez
@tinevez
Hi @imagejan check this.
Feel free to edit it.
I will upload tomorrow. Do you feel like making an announcement on the forum?
Jan Eglinger
@imagejan
Great! :rocket:
Do you want me to create a new topic with an announcement? I don't mind if you annonce, you're Dr. TrackMate after all ;-) But if not, I can write a post tomorrow.
GavinHc71
@GavinHc71
Exz me, dose anyone know how my merge going wrong, as the composite image displayed in only red color? thank you
Jean-Yves Tinevez
@tinevez
@imagejan Please go forward!
Jean-Yves Tinevez
@tinevez
Just uploaded a new version of TrackMate: https://github.com/fiji/TrackMate/releases/tag/TrackMate_-5.1.0 @imagejan we can roll!
:carousel_horse:
:sa:
:santa:
(I can't emoj)
Jan Eglinger
@imagejan
I announced it. Thanks @tinevez !
DarkFuria
@DarkFuria
How can I install fiji on Manjaro linux? Installation from aur isn't working. I've tried to clone git repo & run mvn but now I can't run fiji since I can't find executable
Philipp Hanslovsky
@hanslovsky
@DarkFuria the easiest way to install Fiji is to just download and extract the appropriate Fiji distribution for your OS, for Manjaro that is probably Linux 64 bit. The executable will then be Fiji.app/ImageJ-linux64, and you can update your PATH variable or create an alias. That's how I run Fiji on Arch Linux.
I personally would discourage installing Fiji through the system package manager (pacman/AUR) because Fiji has it's own "package manager" for updates, which will clash with the OS's package manager. Instead, install locally for each user as described above.
Curtis Rueden
@ctrueden
FizzBuzz Enterprise Edition is a no-nonsense implementation of FizzBuzz made by serious businessmen for serious business purposes.
Even the pull requests and comments are hilarious (e.g. this one).
John Bogovic
@bogovicj
:laughing:
Curtis Rueden
@ctrueden
@/all Gitter has released a beta version of threaded conversations. I've enabled it for this room. Click the ... next to any message and choose "Start a thread" to reply to it, Slack style.
Stephan Grein
@stephanmg
I think I could maintain a Fiji .deb package
anyone interested?
Jean-Yves Tinevez
@tinevez
Hello.
I officially and kindly request an update site for Fiji to be created, called DendriteDynamicsTracker. On which I would have upload rights. Many thanks in advance.
Also I would like to travisify a repo. I see that in the scijava-scripts repo there is a script to do so. It requests of course some config, but the link to the documentation returned by the script is dead. Is there some doc somewhere about it?
Jean-Yves Tinevez
@tinevez
I am using gitter on the mobile application and cannot see the threads there.
Curtis Rueden
@ctrueden
@tinevez "Mobile app support coming in the next iteration." [source]