BoneJ uses a bunch of stuff in the 3D Viewer's API (e.g. Marching Cubes mesh creation), and also heavily uses it for e.g. particle visualisation. A roadmap for migrating client code would be helpful if considering ditching 3D Viewer.
Hi @mdoube yes ditching is probably not such a great idea. I also forgot that TrakEM2 depends on 3D viewer as well for some of its functionality. We will disable a large part of Fiji if we remove 3D viewer.