These are chat archives for fiji/fiji

22nd
Jun 2016
Jean-Yves Tinevez
@tinevez
Jun 22 2016 13:55
Hi all, I cannot upload to Java8 update site. I get this error:
java.io.IOException: Error obtaining lock for db.xml.gz.lock: 423 Locked at net.imagej.plugins.uploaders.webdav.WebDAVUploader.lock(WebDAVUploader.java:280) at net.imagej.plugins.uploaders.webdav.WebDAVUploader.upload(WebDAVUploader.java:187) at net.imagej.updater.FilesUploader.upload(FilesUploader.java:260) at net.imagej.ui.swing.updater.UpdaterFrame.upload(UpdaterFrame.java:805) at net.imagej.ui.swing.updater.UpdaterFrame$5$1.run(UpdaterFrame.java:311)
Curtis Rueden
@ctrueden
Jun 22 2016 15:06
@tinevez I asked @aneevel to come in here to troubleshoot that.
Note that historically, this message has just meant you need to wait 10 minutes for the WebDAV lock to expire.
But this time it might be (I don't know), a consequence of the migration to the new web server.
Jean-Yves Tinevez
@tinevez
Jun 22 2016 15:28
Oki. @aneevel as we are in this topic: I tried uploading a sample to samples.fiji.sc that was not an image (a zip file and a xml file). There were no errors, but the files did not appear.
This is because of restrictions on the type of files you can upload right?
Alec Neevel
@aneevel
Jun 22 2016 16:02
@tinevez I am not sure about the type of restrictions; what process did you use to upload? Also, what were the names of the files you uploaded?
Jan Eglinger
@imagejan
Jun 22 2016 17:17
@tinevez did you use Help > Upload Sample Image in Fiji? This command is meant for users, and the uploaded image should not be publicly visible at samples.fiji.sc...
Jean-Yves Tinevez
@tinevez
Jun 22 2016 18:47
@aneevel aaahhhhhh.
Yes indeed I used the Fiji plugin. What should I use then if I want to put images on samples.fiji.sc?
Curtis Rueden
@ctrueden
Jun 22 2016 19:27
@tinevez There is a "promote sample image" feature at http://imagej.net/Special:Incoming, but that special page is currently broken after the MediaWiki upgrade. In the meantime, you can ask an admin to just do it.
Note also that there was a bug when uploading images with spaces in the name, where the destination filename would be just the portion before the space; this might have been fixed now though.
Anyway, as @imagejan says, the destination server for Help > Upload Sample Image is uploads.imagej.net which is not publicly accessible.
Jean-Yves Tinevez
@tinevez
Jun 22 2016 20:16
@ctrueden Who would be such an admin?
Curtis Rueden
@ctrueden
Jun 22 2016 20:16
Me or @aneevel. Which file(s) do you want to promote?
MaMuT_TGMM_Parhyale_demo.xml ? Something else?
Jean-Yves Tinevez
@tinevez
Jun 22 2016 20:21
The MaMuT XML file yes.
There was another one I sent you be email: a zip file of a larger tif. The zip file saves 60% of space. And finally I have other XML file.
These are all the for the TrackMate paper supplemental information and TrackMate wiki documentation - they serve as basis for tutorials.
Curtis Rueden
@ctrueden
Jun 22 2016 20:45
@tinevez OK, it is done. Does the listing look OK now?