These are chat archives for fiji/fiji

7th
Sep 2016
rui zheng
@ruizheng14_twitter
Sep 07 2016 16:25
Hi, I am using trackme2 for alignment. but somehow i got into some path issues. i first imported the image stack, then i opened a blank trakem2, and import the image stack, then i got the path not found and can not regenerate mipmap error. Does any body know what is going on? i ran it before, and it works, and i just suddenly getting this errors.
FSLoader.fetchImagePlus: no image exists for patch z00.tif images 1 z=0.0 #8 at path /Users/rui14/Desktop/aligntk-1.0.2/examples/images/
Can't regenerate mipmaps for patch z00.tif images 1 z=0.0 #8
FSLoader.fetchImagePlus: no image exists for patch z01.tif images 2 z=1.0 #11 at path /Users/rui14/Desktop/aligntk-1.0.2/examples/images/
Can't regenerate mipmaps for patch z01.tif images 2 z=1.0 #11
FSLoader.fetchImagePlus: no image exists for patch z02.tif images 3 z=2.0 #14 at path /Users/rui14/Desktop/aligntk-1.0.2/examples/images/
Can't regenerate mipmaps for patch z02.tif images 3 z=2.0 #14
Cannot regenerate mipmaps for patch z00.tif images 1 z=0.0 #8
Cannot regenerate mipmaps for patch z00.tif images 1 z=0.0 #8
Cannot regenerate mipmaps for patch z00.tif images 1 z=0.0 #8
Cannot regenerate mipmaps for patch z00.tif images 1 z=0.0 #8
Cannot regenerate mipmaps for patch z00.tif images 1 z=0.0 #8
Cannot regenerate mipmaps for patch z00.tif images 1 z=0.0 #8
Cannot regenerate mipmaps for patch z00.tif images 1 z=0.0 #8
Cannot regenerate mipmaps for patch z00.tif images 1 z=0.0 #8
Cannot regenerate mipmaps for patch z00.tif images 1 z=0.0 #8
Cannot regenerate mipmaps for patch z00.tif images 1 z=0.0 #8
File exists for z01.tif images 2 z=1.0 #11 at /Users/rui14/Desktop/aligntk-1.0.2/examples/images
--> not updating path.
File exists for z02.tif images 3 z=2.0 #14 at /Users/rui14/Desktop/aligntk-1.0.2/examples/images
--> not updating path.
File exists for z00.tif images 1 z=0.0 #8 at /Users/rui14/Desktop/aligntk-1.0.2/examples/images
--> not updating path.
when i click on the repair, it says the path exists too
Curtis Rueden
@ctrueden
Sep 07 2016 18:16
@ruizheng14_twitter I suggest you post on http://forum.imagej.net/ with tag trakem2, and maybe mention @acardona and/or @axtimwalde (the TrakEM2 guys).
rui zheng
@ruizheng14_twitter
Sep 07 2016 18:58
ok, thanks!
Kyle I S Harrington
@kephale
Sep 07 2016 22:24
@tinevez I believe that @skalarproduktraum was setting up some of the ClearVolume artifacts on the ImageJ maven repository, but there might have been some hiccups due to the use of gradle or something. I would also love to be able to use ClearGL, Scenery, and OpenVR through a repository.
I'm happy to help you out while you're prototyping as well. Starting this coming Monday I'm a lot more flexible. It would also be quite useful on the ThreeDViewer side of things, since it would help prioritize which features to focus on first.