These are chat archives for fiji/fiji

28th
Jan 2018
Varun Kapoor
@kapoorlab
Jan 28 2018 11:10
Hi people, I heard a talk about the RACE algorithm for segmentation, digging deep it uses viscous watershed transform: https://link.springer.com/content/pdf/10.1007/s10851-005-4893-3.pdf, is there an implementation of this algorithm in Fiji/ imagej-ops or anywhere else that you know off?
Jan Eglinger
@imagejan
Jan 28 2018 11:26
@kapoorlab are you talking of this original RACE implementation: https://bitbucket.org/jstegmaier/race/overview and this paper: http://dx.doi.org/10.1016/j.devcel.2015.12.028 ?
Varun Kapoor
@kapoorlab
Jan 28 2018 11:27
Thanks that helps, I also wanted to know if there is an implementation of viscous watershed transform.
ksebas3
@ksebas3
Jan 28 2018 20:02
How do I know the wavelength of the image if I am using 2-photon confocal micoscopy? I have up to 2 to 3 channels but I can't tell from the metadata what wavelengths are being used? Can someone explain? Thank you!