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  • Aug 22 17:44
    ctrueden commented #205
  • Aug 16 17:34
    acardona opened #231
  • Aug 07 13:48
    chalkie666 opened #230
  • Aug 02 13:33
    tinevez labeled #107
  • Aug 02 13:33
    tinevez labeled #107
  • Aug 02 13:32
    tinevez opened #107
  • Aug 02 13:30
    tinevez commented #106
  • Aug 02 13:29
    tinevez synchronize #106
  • Aug 02 13:29

    tinevez on serialize-feature-model2

    Avoid feature name inflation wh… Update the MaMuT exporter examp… (compare)

  • Jul 18 11:57
    tpietzsch commented #106
  • Jul 18 11:44
    tinevez commented #106
  • Jul 18 11:41
    tpietzsch commented #106
  • Jul 18 11:32
    tinevez commented #106
  • Jul 18 11:31
    tpietzsch commented #106
  • Jul 18 11:20
    tpietzsch synchronize #106
  • Jul 18 11:20

    tpietzsch on serialize-feature-model2

    formatting Demonstrate that feature names … Add TODO and 2 more (compare)

  • Jul 10 13:08
    tinevez closed #104
  • Jul 10 13:08
    tinevez commented #104
  • Jul 10 13:08
    tinevez opened #106
  • Jul 10 10:56

    tinevez on serialize-feature-model2

    Fix weird compile error with Op… Make some static methods of MaM… JUnit test for the TrackMate im… and 5 more (compare)

Rajan Singh
@rajan13ve_gitlab
can anyone help me how to reduce or minus just the black background and calculate the mean gray value of the whole image ?
please help people i am desperate for this
and i dont know what to do
Gabriel Selzer
@gselzer
@rajan13ve_gitlab check out https://forum.image.sc/, it is a good place for questions such as yours. This channel is used more for development.
Curtis Rueden
@ctrueden
@axtimwalde I noticed that there are some improvements to the mpicbg library and plugin that have not yet been released. I am in the process of releasing components, validating via melting-pot, and finally uploading the new versions to the Java-8 update site. Do you want to cut a release of mpicbg as part of that? Or hold off for now?
Curtis Rueden
@ctrueden
Similarly, imglib2-realtransform has the recent work by @bogovicj on master... could release another version of that if you like.
And @tpietzsch, there are some new commits on imglib2 core that could be released if you want.
Ulrik Günther
@skalarproduktraum
hey everyone! i remember somebody posting something here recently about including javafx as maven artifact. if that person is reading this... could you please repeat that info? thanks :sunglasses:
John Bogovic
@bogovicj
I think that was likely to be @hanslovsky (?)
Ulrik Günther
@skalarproduktraum
thanks, @bogovicj, i was also suspecting that ^^
and @haesleinhuepf: laaaaaaaaaame! ;-)
Kyle I S Harrington
@kephale
@skalarproduktraum its because he has realized that it is more important to learn Clojure first :D
Stephan Saalfeld
@axtimwalde
@ctrueden, mpicbg yes, please. I tried to release this but the repository is still in the old trakem2 style format which does not work with release.sh and I think I need new accounts wherever to do it manually.
imglib2-realtransform yes, but that should be easy for us too
mpicbg would be 1.3.0 because API was added.
Curtis Rueden
@ctrueden
@axtimwalde Using release-version.sh with the mpicbg repo should work, in theory. It should be fine for multi-module builds as long as they are mono-versioned, which that one is. Could you post the error you received when you tried to run the script?
Oh, it looks like maybe I have push access. I can try running it, then.
Ah, I see some kind of bug with the version extraction. I'll look into it.
Curtis Rueden
@ctrueden
Fixed that bug: scijava/scijava-scripts@fdf82c2. Now the javadoc build fails during the local release; need to track down how to make javadoc generation less strict during release builds.
tpietzsch
@tpietzsch
@ctrueden if you are not done releasing yet, sure, please go ahead and do a imglib2 core release!
Philipp Hanslovsky
@hanslovsky
You will need Java 10, though
Curtis Rueden
@ctrueden
@tpietzsch Sure thing, I just released imglib2 5.6.1 (in retrospect: it should have been 5.7.0, due to new API—it is helpful if people adding new API also bump the SNAPSHOT version in the POM). It will probably be a couple more days (especially since it's the weekend now) before I've got everything fully updated+released+uploaded.
Varun Kapoor
@kapoorlab
imagej.net/Fiji website is down, anybody knows why?
Jan Eglinger
@imagejan
@kapoorlab works for me right now. temporary issue maybe?
Varun Kapoor
@kapoorlab
@imagejan right it works now for me too.
Ulrik Günther
@skalarproduktraum
hello everyone, don't wanna do advertisement, but the humble bundle currently has a set of java ebooks available for quite a low price (0.88 EUR), and i thought some people here might be interested in this: https://www.humblebundle.com/books/java-by-packt-books
Curtis Rueden
@ctrueden
@/all I finally thought of a (retrospectively obvious) way to make blanket HTTPS work for ImageJ web sites, without breaking the ImageJ Updater! We can use a conditional redirect based on the user agent: if it is an Updater user agent string, allow HTTP; otherwise, redirect to HTTPS. I have now put this rule in place, and it is working in my tests locally. But I'd appreciate it if folks could try updating their Fiji installations and let me know if there are any errors.
Still cannot blanket redirect maven.imagej.net to HTTPS yet, for separate technical reasons, but I am hopeful that imagej.net, update.imagej.net, update.fiji.sc, sites.imagej.net and wiki.imagej.net can all fully blanket redirect from now on within web browsers.
Philipp Hanslovsky
@hanslovsky
I updated my local fiji, which told me it is up to date (without error), and an older Fiji that I had lying around (without error as well).
Curtis Rueden
@ctrueden
@hanslovsky Thanks! Great news.
Stefan Helfrich
@stelfrich
@ctrueden Same here at the course. No updates but also no error. :+1:
Jean-Yves Tinevez
@tinevez
@ctrueden big updates on win 10 an no errors.
Curtis Rueden
@ctrueden
Wonderful.
Stephan Saalfeld
@axtimwalde
@ctrueden does the updater not work with https?
Curtis Rueden
@ctrueden
@axtimwalde Nope, because some http URL is hardcoded and it does not follow redirects.
Stephan Saalfeld
@axtimwalde
even if I change the URL to https manually?
Curtis Rueden
@ctrueden
Sure, it will fetch the stuff over HTTPS. But the bootstrapping uses e.g. http://imagej.net/List_of_update_sites.
Stephan Saalfeld
@axtimwalde
so fixing all the hardcoded URLs in the updater to https would fix this?
(over time)
Curtis Rueden
@ctrueden
I think so, but then all the people running Fiji with 1.8.0_66 would no longer be able to update.
Stephan Saalfeld
@axtimwalde
is that a bad thing?
Curtis Rueden
@ctrueden
Yes. Most people are in that situation.
Stephan Saalfeld
@axtimwalde
they could download a new version? (I am doing it all the time)
Curtis Rueden
@ctrueden
If we are going to break Fiji updates for 75% of the userbase, I'd rather just deploy a new version of the updater with fewer warts.
Me too, but I don't think we are the typical scientific user.
Based on conversations I have had with scientists, a lot of them have heavily customized installations—dropped in plugins from IJ1 site, etc.—and needing to "redo" your Fiji is painful.
Stephan Saalfeld
@axtimwalde
but they would also break with updates, I think the conservative heavily customized installations never update anyways