https://wilkelab.org/SDS375/schedule.html some nice R/stats materials we can use for gallantries. (cc-by-4 / mit licensed.) could be nice to integrate as trainings into the GTN in IO1.
where we can just provide the app as an input to the IT?
would love to see this for gallantries :)
maybe I can find time to get https://github.com/hexylena/docker-galaxy-volume/ working with all of the ITs, to give a read-only filesystem for accessing data. Could be cool.
we need that in jupyter, rstudio, would make life so much beter.
Helena I will also update the jupyter notebook soon
if you have a whishlist for missing packages
;)
Not sure what is behind generic R Shiny IE (or maybe I forget something I said ;) )
But yes we are working on providing new R Shiny apps as GxIT and there is at least in fact 2 related ideas, one is to propose a "generic" manner to create GxIT from R Shiny apps, another is to use something like shinyproxy to deploy Shiny apps.... This second idea will make the manner to deploy shiny apps on Galaxy a little bit like for deplying jupyter notebooks... So shinyproxy can be used a little bit like Jupyter lab
Have never heard of shinyprozy before
Cool :)
We made some tests last year, quite easy to deploy and use
Ok even more in support of generic GxIT option now :)
Fine for the people with k8s but this is not so many groups I think that are willing to take on either the GKE bill or the person hours to manage k8s
Since more people can run a genetic GxIT and few can run shinyproxy
https://live.usegalaxy.eu/u/helena-rasche/h/rstudio-demo @yvanlebras is it expected that the "species occurences" table is empty?
I copied and pasted from the GTN
this is really not a happy news...
I am on it
I need to update the tuto
here is a file as used for the tuto as output of the "Get species occurences data" https://ecology.usegalaxy.eu/datasets/11ac94870d0bb33ae3b4309e7498da26/display?to_ext=tabular
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with @ColineRoyaux we made some tests @hexylena and apparently, this is the installation on eu who doesn't seems to work properly as making a fresh instal on our Galaxy instance give the good results
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if we decide we need some bash lessons for gallantries, it could be a fun 'homework' for students https://gitlab.com/slackermedia/bashcrawl