I'm impersonating one of my users, doing some analysis. I run a tool on a collection, which works. I try to run the next tool, and get
Error executing tool: User does not have permission to use a dataset (49914) provided for input.
Does anyone know what might cause this?
@jmchilton I can. I see that the user I'm impersonating has permissions over the dataset. I can look at the top of the BAMS with the eye, I can view info with the "i" and I can edit attribute with the pencil. Everything else looks right.
It also seems to be the case that he can't run the job logged in as himself (not via an admin impersonating him). It's possible the impersonation didn't work, so to speak, and despite the Permissions saying he has permissions, somehow only the admin has permissions.
I can give you access to my galaxy to take a look if that would help. Send me a PM.
just got this error when i tried to use a just installed copy of trim galore
Failed to activate conda environment! Error was: Not a conda environment: /email@example.com
Is this a tool bug or have I misconfigured my galaxy ? I recently upgraded, but conda resolution was working fine before .
source activate firstname.lastname@example.org conda at /mnt/galaxy/data/galaxy/tool-deps/_conda/bin on PATH
ln -s $reference_source.ref_file.fields.path reference.fasta && ln -s `dirname $reference_source.ref_file.fields.path`/../sam_indexes/**/*.fai reference.fasta.fai &&