there's a broken link in the toolshed for iuc's
package_graphicsmagick_1_3_20 (latest version):
which has since been fixed in the tools-iuc repo of galaxy:
what's the cause of the disparity, and is there a way to update the toolshed.g2.bx.psu.edu version? thanks!
/tmpbased path, yielding out-of-disk errors on my system. They are originally from
devteamand do not follow IUC recommendations. I'm wondering how much to change though...
<env>statements in job_conf.xml it will get copied into the job environment (which is something I rely on in the draft version of my wrapper).
$TEMPdoesn't get expanded. I'm thinking that "TMP_DIR='\$TEMP'" should work but like I said I'm having trouble testing... I might need to inject a
job_conf.xmlthat sets '$TEMP' to such a pathological value. How are you doing your testing?