Could this be merged too? It updates
iqtree to handle custom models correctly: galaxyproject/tools-iuc#2835
Hi, Can you please update data managers for busco. Looks like Busco team has moved their databases to new location from the one before. The new location URL is http://busco-archive.ezlab.org/datasets/ for all the databases. Please help!
starting to look really good
I have no idea what’s going on there
make takes forever to test
and fills up my hard disk locally
there is a chance we can get qiime to work though, since it passed travis tests prior to containerizing
we just need to figure out what the container is missing
yeah
not in the list
qiime is 33 failing tests
the raceid tests just need a higher delta (it’s 15 currently ...)
scpipe seems to have trouble contacting biomart
the ebi tools use an API that seems to have changed
CoverageReport2 I would deprecate, it’s a custom tool by @Takadonet et al
I tried bumping the outdated dependencies, but the perl script just doesn’t run
and for coverage we can use multiqc
valet I tried looking into, the test aleays comes out different and with NA NA NA instead of an actual value
no idea what to do there
and finally fastx_trimmer I also spend quite some time figuring out what’s wrong, it’s just the fastq.gz test that fails
I did include my open IUC PRs though
if you include the upload jobs I’d guess that comes out to ~ 7500 jobs assuming about 2 input datasets per test
cshl_fastx_trimmer tests pass for me using Conda deps
So it's something related to the container
we did bump it recently, let me find the PR
the IUC PR is here: https://github.com/galaxyproject/tools-iuc/pull/2791/files