fwiw I also get the following with pangolin 4.0.5+galaxy1 on EU (I don't have 4.x on .org):
Error: the input query fasta could not be parsed.
Double check your query fasta and that compressed stdin was not passed.
Please enter your fasta sequence file and refer to pangolin usage at: https://cov-lineages.org/pangolin.html for detailed instructions.
Error: the input query fasta could not be parsed.
Double check your query fasta and that compressed stdin was not passed.
Please enter your fasta sequence file and refer to pangolin usage at: https://cov-lineages.org/pangolin.html for detailed instructions.
rm: cannot remove '/data/jwd/main/046/882/46882007/tmp/out.3651279': No such file or directory
rm: cannot remove '/data/jwd/main/046/882/46882007/tmp/err.3651279': No such file or directory
I've been trying to explain to them why it's not a great idea to switch your scikit-learn version when building models for a given release, but seems they rae not really getting the point :(
That's for your 3.1.20 question.
Older models installed via a DM are working still.
Regarding the v4 series, there should be
4.0.5+galaxy2 in the toolshed already (not sure why it didn't get installed on .eu over the weekend), which addresses a few issues. Your error message really looks like something's wrong with your FASTA input though. If not, then what were the exact parameters you've been using?
Hi, I opened this PR to update rpbasicdesign tool : https://github.com/brsynth/tools-iuc/pull/new/rpbasicdesign_update_1_1_0 . Can anyone review/merge it please ? I also opened this PR (galaxyproject/tools-iuc#4458) for another tool (dnabot) and it was merged but I can't find it in the toolshed . Can you check what's wrong please? Thank you for your work.
Hope all is ok on your sides !
We are trying to add some conda recipes but tests fails...
If someone has an idea conda-forge/staged-recipes#18967
1 reply
> library('dissUtils') 2022-05-17T07:43:35.5948057Z Error in library("dissUtils") : there is no package called 'dissUtils'
(the recipes are related to
mmand, dissUtils and geometa R packages)
Moreover is there anyone there having created a conda recipe from an archived (outdated) R package?
just using https://github.com/bgruening/conda_r_skeleton_helper to generate conda recipe from R package, we have some "extra files" not mandatory normally for proposing a recipe BUT in fact this is mandatory for the github tests to b ok ;)
Another question ;)
concerning the fact we want a tool proposing as input data a composite format, shp.
we wrote this :
<inputs>
<param type="data" name="input" format="shp,xml,json,tabular,txt"https://toolshed.g2.bx.psu.edu/repository?repository_id=4127eedef3aaafec
but in fact I see that we can't access shp composite files from the tool (for example on eu: https://ecology.usegalaxy.eu/root?tool_id=toolshed.g2.bx.psu.edu/repos/ecology/gdal_ogr2ogr/gdal_ogr2ogr/3.0.0)
if you have any information
;)
hope all is ok on your side !
for example, with the ogr2ogr tool, I can't select the dataset 21
with type binary
so this is corerct that you can not select it
you have uploaded a collection
Youhouhou
Thank you !!!!!!!
Amazing
I'm trying to make sense of how to use
planemo autoupdate - if I just run it locally it times out trying to install tools... so I'd like to use the --profile option... but I don't understand how profiles work... they seem to need a Galaxy URL and Galaxy user or admin API key... but I don't see where the Galaxy user is specified. Or what the database stuff is for
With the API key you don't need to specify a user. Galaxy will know which user belongs to the API key.