4.0.5+galaxy2in the toolshed already (not sure why it didn't get installed on .eu over the weekend), which addresses a few issues. Your error message really looks like something's wrong with your FASTA input though. If not, then what were the exact parameters you've been using?
> library('dissUtils') 2022-05-17T07:43:35.5948057Z Error in library("dissUtils") : there is no package called 'dissUtils'
planemo autoupdate- if I just run it locally it times out trying to install tools... so I'd like to use the
--profileoption... but I don't understand how profiles work... they seem to need a Galaxy URL and Galaxy user or admin API key... but I don't see where the Galaxy user is specified. Or what the database stuff is for
--galaxy_url URL --galaxy_user_key API_KEYto the command