Hope all is ok on your sides !
We are trying to add some conda recipes but tests fails...
If someone has an idea conda-forge/staged-recipes#18967
1 reply
> library('dissUtils') 2022-05-17T07:43:35.5948057Z Error in library("dissUtils") : there is no package called 'dissUtils'
(the recipes are related to
mmand, dissUtils and geometa R packages)
Moreover is there anyone there having created a conda recipe from an archived (outdated) R package?
just using https://github.com/bgruening/conda_r_skeleton_helper to generate conda recipe from R package, we have some "extra files" not mandatory normally for proposing a recipe BUT in fact this is mandatory for the github tests to b ok ;)
Another question ;)
concerning the fact we want a tool proposing as input data a composite format, shp.
we wrote this :
<inputs>
<param type="data" name="input" format="shp,xml,json,tabular,txt"https://toolshed.g2.bx.psu.edu/repository?repository_id=4127eedef3aaafec
but in fact I see that we can't access shp composite files from the tool (for example on eu: https://ecology.usegalaxy.eu/root?tool_id=toolshed.g2.bx.psu.edu/repos/ecology/gdal_ogr2ogr/gdal_ogr2ogr/3.0.0)
if you have any information
;)
hope all is ok on your side !
for example, with the ogr2ogr tool, I can't select the dataset 21
with type binary
so this is corerct that you can not select it
you have uploaded a collection
Youhouhou
Thank you !!!!!!!
Amazing
I'm trying to make sense of how to use
planemo autoupdate - if I just run it locally it times out trying to install tools... so I'd like to use the --profile option... but I don't understand how profiles work... they seem to need a Galaxy URL and Galaxy user or admin API key... but I don't see where the Galaxy user is specified. Or what the database stuff is for
With the API key you don't need to specify a user. Galaxy will know which user belongs to the API key.
Hey @pvanheus I don't think you need to use a profile. It should be enough to append
--galaxy_url URL --galaxy_user_key API_KEY to the command
and do I need to tell it to use the external_galaxy engine?
But it will probably be a lot faster to point it towards a server, since you can skip tool installation
but then you can only update the workflow to at most the latest version of the tools which are installed on that server