I have to run to a meeting now, I'll be back in touch aftwards, sorry about this.
anyway, back later.
if you want auth'd access, you want auth'd access. That's just a "Is parsec working?" test, not necessary.
if you've gotten through that, try a
parsec histories get_histories
I don't know off the top of my head, can you test something?
OH
your proxy does auth, you're using remote user?
thanks... i'll let you know if i have more trouble... might propose a doc change later.
including the apache config because I'm not seeing it anywhere
yeah - the links on the galaxy wiki are dead... i did not acheive success with ``` location /api {
#not working yet... would like to allow access to /api without requiring authentication
auth_pam off;
allow all;
proxy_pass http://galaxy_app;
proxy_set_header REMOTE_USER $remote_user;
proxy_set_header X-Forwarded-Host $host;
proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for;
proxy_buffering on;
proxy_read_timeout 900;
proxy_buffers 1000 4k; #yes i'm trying a 4M buffer for galaxy
proxy_next_upstream error;
}```
this is how i have the main proxy working:
location / {
auth_pam "NEB Credentials";
auth_pam_service_name "nginx";
proxy_pass http://galaxy_app;
proxy_set_header REMOTE_USER $remote_user;
proxy_set_header X-Forwarded-Host $host;
proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for;
proxy_buffering on;
proxy_read_timeout 900;
proxy_buffers 1000 4k; #yes i'm trying a 4M buffer for galaxy
proxy_next_upstream error;
}
yep, sure will. see ya there.
i'm using /api
correct
Hello @erasche ! I just found parsec (very cool) and set it up, but immediately got a
Problem loading command toolshed, exception cannot import name 'bioblend_exception'
Problem loading command users, exception cannot import name 'bioblend_exception'
Problem loading command utils, exception cannot import name 'bioblend_exception'
any ideas where this might be coming from?
When you installed this did you install it from
pip or from the source?
Ok, thanks for this report. I have a good idea why it is happening, I'll probably put out a new release tomorrow.
as for importing, it's pretty thin. E.g. https://github.com/galaxy-iuc/parsec/blob/master/parsec/commands/histories/get_histories.py#L35 ctx.gi is just the bioblend library reference. 95% of the library is the automatically generated support-code / supporting functions based on bioblend's documentation. We have some custom utility functions and those might be useful to be able to import. If it looks possible to do, I'll document this for the next release.