parsec histories get_histories
#not working yet... would like to allow access to /api without requiring authentication
auth_pam off;
allow all;
proxy_pass http://galaxy_app;
proxy_set_header REMOTE_USER $remote_user;
proxy_set_header X-Forwarded-Host $host;
proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for;
proxy_buffering on;
proxy_read_timeout 900;
proxy_buffers 1000 4k; #yes i'm trying a 4M buffer for galaxy
proxy_next_upstream error;
}```
location / {
auth_pam "NEB Credentials";
auth_pam_service_name "nginx";
proxy_pass http://galaxy_app;
proxy_set_header REMOTE_USER $remote_user;
proxy_set_header X-Forwarded-Host $host;
proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for;
proxy_buffering on;
proxy_read_timeout 900;
proxy_buffers 1000 4k; #yes i'm trying a 4M buffer for galaxy
proxy_next_upstream error;
}
Problem loading command toolshed, exception cannot import name 'bioblend_exception'
Problem loading command users, exception cannot import name 'bioblend_exception'
Problem loading command utils, exception cannot import name 'bioblend_exception'
pip
or from the source?
Ok, thanks for this report. I have a good idea why it is happening, I'll probably put out a new release tomorrow.
as for importing, it's pretty thin. E.g. https://github.com/galaxy-iuc/parsec/blob/master/parsec/commands/histories/get_histories.py#L35 ctx.gi is just the bioblend library reference. 95% of the library is the automatically generated support-code / supporting functions based on bioblend's documentation. We have some custom utility functions and those might be useful to be able to import. If it looks possible to do, I'll document this for the next release.