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right?
Hey there! I'm running Galaxy 18.05 on a server, I have a tool that creates some javascript html output which I have whitelisted. I still get
javascript is needed to display data.
If you try to view this data on galaxy please contact your administrator to authorise javascript or download the file to view.
If I donwload the file it displays no problem.. I checked the whitelist config file and the tool that produced it is listed there. FastQC works fine.
qname_input_sorted.bam
and the subsequent tools will require that as input. However, it seems galaxy will not accept this format for upload(?) - i.e. i don't know how to write a test that has this param: <param name="mapping_output" value="mapped_reads.bam" ftype="qname_input_sorted.bam"/>
- the error message I get is: `An invalid option was selected for file_type qname_input_sorted please verify'
qnamed_sorted.bam
. qname_input_sorted.bam
is for aligners that were run in galaxy and that output the reads in the order that they were read in. This isn't the official "SO:queryname", but qname_sorted.bam
is compatible with qname_input_sorted.bam
, so there will be no additional conversion