Data intensive science for everyone. https://galaxyproject.org | https://usegalaxy.org | https://help.galaxyproject.org
(it will take a few hours)
but this should get your started
with a few hundret of tools ;)
Also is there anything specific for epigenomics?
but the epigenetics file works best with the IUC file ... e.g. mapping, QC etc are all part of the above linked IUC file
Could anyone help with that?
Sorry.
Thanks for answering in English. My German is non-existant.
And, jsut let me say, that as a person who only understands one language, I stand in awe of the global Galaxy and borader scientific community's ability to communicate in English. I thank you every day.
(but that doesn't help with @beneopp's MultiQC issues!)
I am trying to run FastQc files on MultiQC but the data is not recognized. The files were executed in a way that the MultiQC did not recognize the files existed. I downloaded SRA files to Galaxy. These files were transfered to a Paired-end data folder with each accession (sample) inside along with the forward and reverse fastq files. This general file format remains after running these Files through FastQC.
Which server are you using, can you share a history with us?
- BioMaS https://galaxyproject.org/use/biomas/ Public server: BioMaS Galaxy can not be accessed.
- BitLAB https://galaxyproject.org/use/bitlab/ extensive tutorial can not be accessed.
Good morning everyone! I am getting an issue with using
make_popupmenu script. I am trying to create a dropdown menu on the success of an ajax call. The ajax call is performed on a button click. The dropdown menu is created but only on the second or sometimes third click on this button. I checked that the program control goes inside make_popupmenu but it is created only after successive clicks.
has anyone faced this issue before? Is it related to initilization?
buttons.append(
$("<a/>")
.addClass("panel-header-button")
.attr('id', 'show-recommendation-' + random_suffix)
.attr('href', '#')
.attr('title', 'Show recommended tools')
.html('<span class="fa-icon-button fa fa-arrow-right"></span>')
.click(e => {
var tool_sequence = self.get_workflow_path(self.workflow.to_simple(), node.id, node.content_id);
console.log(tool_sequence)
Utils.request({
type: "POST",
url: `${getAppRoot()}api/workflows/get_tool_predictions`,
data: {"tool_sequence": tool_sequence},
success: function(data) {
var predicted_names = data.predicted_names,
predicted_ids = data.predicted_ids,
pred_tools = {};
for(var i=0; i < predicted_names.length; i++) {
var name = predicted_names[i];
pred_tools[predicted_ids[i]] = (name => () => {
workflow_globals.app.add_node_for_tool(name, name);
})(name);
}
make_popupmenu($("#show-recommendation-" + random_suffix), pred_tools);
}
});
})
thanks!
In this screenshot above, the dropdown is created on the click of 'right-arrow' button ...
If I remember correctly, make_popupmenu sets up the event bindings and whatnot for the menu, but it doesn't actually 'click' it. What you're seeing working is actually that on the first click, it adds bindings and builds the popupmenu. Then the second click, it's actually clicking it and popping it up.
My guess is the second click might actually also make the ajax call again, which you probably don't want to do?
galaxyproject/galaxy#2340 this is the issue I'm referring to, but I'm not sure if it's implemented for the API
It would be helpful if I can get some help on this how to show the dropdown on the first click ...
here is the codebase: https://github.com/anuprulez/galaxy/tree/predict_tools
I checked the code for showing dropdown (for save, save as, close features) in the workflow editor ... it works fine there ...
I am not sure if it is clean to call
click event through the code on the first click making the second click unnecessary ...
the "right-arrow" click shows the possible tools a user can use to create workflow
I am doing a "proof-of-concept" how to better integrate this recommendation system to Galaxy UI