Where communities thrive


  • Join over 1.5M+ people
  • Join over 100K+ communities
  • Free without limits
  • Create your own community
People
Activity
thepineapplepirate
@thepineapplepirate
is the EU server down?
its's under heavy load
thepineapplepirate
@thepineapplepirate
Ok, thanks!
github-ic
@github-ic
But when we restart galaxy since we are using slurm the jobs will continue running?
Nate Coraor
@natefoo:matrix.org
[m]
Correct
seahu1
@seahu1
Hello, when I click"ALL workflows"on https://usegalaxy.org/,it tells
Hello, when I click"ALL workflows"on https://usegalaxy.org/,it tells "You must be logged in with proper credentials to make this request." How can I log in? I can't find any key.
Nicola Soranzo
@nsoranzo:matrix.org
[m]
@seahu1: Click on "Login or Register" in the top menu
Damla Aygün
@aygun09_gitlab
Hello, I'm trying to upload a whole exome data (fastq) by using FileZilla. I watched tutorial for ftp here > https://galaxyproject.org/ftp-upload/ but in there I have a problem; there is a mismatch between certificate fingerprints what I am viewing from your website and what filezilla is showing. How can I solve that?
6 replies
Helena Rasche
@hexylena:matrix.org
[m]
Glad it worked ok! Good luck
1 reply
pdagosto
@pdagosto
We have had a disk space issue on our Galaxy server after loading some data into the database. We have another location with enough disk space to accommodate the database but I have some questions.
  1. Is the default database SQLite or some DB server (e.g.,postgres).
1 reply
  1. Is it safe to move the database after shutting down Galaxy?
  2. Can we tell Galaxy where the database resides?
1 reply
We're using the default (out of the box) config. We didn't do anything special to install postgres. Would that not result in teh DB being SQLite?
1 reply
David Hong
@hong7734_gitlab
I have been using Galaxy (server name:http://131.247.66.74:8080/) but recently I got an error but our university IT guy wants me to contact Galaxy admins. So Galaxy does not support this server anymore?
8 replies
Christophe Antoniewski
@drosofff
Hey ! I just found by chance a junk tool in the main https://toolshed.g2.bx.psu.edu/ : buyhoverboardsuk
Martin Cech
@martenson
@drosofff thanks for the reporting, I got rid of it.
Asaduzzaman Asad
@zasamanzud:matrix.org
[m]
Hi there, I need some help regarding the addition of a reference sequence (Campylobacter jejuni) in the galaxy database. Can anyone help me out here, please?
1 reply
gluatuno
@gluatuno
I wonder how to covert embl format to fasta format on galaxy. Thanks!
1 reply
basic99
@basic99
@natefoo:matrix.org I am helping github-ic install slurm. It is working but need to change slurm.comf. Can this be done without losing jobs and workflow currently running?
2 replies
Thielyfabian
@Thielyfabian
Why can't I add data on the platform anymore? data that before I remove them?
dannon
@dannon:matrix.org
[m]
@Thielyfabian: Is your quota full?
Thielyfabian
@Thielyfabian
@dannon:matrix.org no, it's 0%, but I can't add anything with more than 1.0G
dannon
@dannon:matrix.org
[m]
Which Galaxy server is this? And, you're logged in, right?
Thielyfabian
@Thielyfabian
I'm using https://usegalaxy.eu/, I'm logged in.
Björn Grüning
@bgruening
@Thielyfabian please use the FTP server https://galaxyproject.eu/ftp/
Thielyfabian
@Thielyfabian
@bgruening can you explain me in detail how to use? or indicate me a tutorial for this?
bgruening
@bgruening:matrix.org
[m]
everything is linked on that page above. Here are instructions to use the FTP https://galaxyproject.org/ftp-upload/
are you using Windows?
Thielyfabian
@Thielyfabian
yes
Björn Grüning
@bgruening
maybe your explorer can be used as FTP client, you can try to type in ftp://ftp.usegalaxy.eu
but I would recommend you to follow the links above
Thielyfabian
@Thielyfabian
you will try thank you
Yusheng
@Yusheng_Tan_twitter
Hello there, I wonder how I can get permission to reuse a screenshot of Galaxy homepage in my thesis literature review section. Thanks!
Björn Grüning
@bgruening
@Yusheng_Tan_twitter afaik you do not need permissions. Use the screenshots as you like, as long as it contains your data and no data, or personal information from someone else
1 reply
mariipia10
@mariipia10
hello everyone, i'm currently trying to set up a local version of galaxy, especifically the training-materials repo. I'm running on Windows 10 with Windows Subsystem for Linux, i got it up and running but can't seem to do so when trying to access the training tutorial. I've cloned the training-materials folder but when clicking the tutorial hat icon "Click to run" is unavailable. Any clues as to what i'm missing? Thanks in advance
bgruening
@bgruening:matrix.org
[m]
@mariipia10: you are probably missing all the tools from the training. Can this be?
You need more than the Galaxy instance, you would also need to tools that are needed for your specific training.
I recommend to use a public instance for your training, which has also the needed computational resources.
mariipia10
@mariipia10
i'm not looking for the training tutorial per se, I've completed in a public instance already! I'm looking to fix some typos and references on already created tutorials
bgruening
@bgruening:matrix.org
[m]
I see for this you do not need Galaxy, you only need the training repo, clone it and run those website.
In the training-material folder, run make serve
(make you need to run make install before to install all dependencies to run the training website)
mariipia10
@mariipia10
thanks a lot for your help, i'll try it and get back to you!
mariipia10
@mariipia10
i've got quite a bit of errors after running make serve, mostly it couldnt install gems and jekyll. i'm running "sudo apt-get install gcc" as it was missing, @bgruening:matrix.org question, if i run "make install" again will it skip those dependencies that it already installed and just install the missing ones? or should i do it manually?
bgruening
@bgruening:matrix.org
[m]
make install-conda && make install
should set you up with everything
Using the conda package manager
mariipia10
@mariipia10
great, thanks again
bgruening
@bgruening:matrix.org
[m]