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    Björn Grüning
    @bgruening
    You can define some key:value pairs like we do here: https://github.com/usegalaxy-eu/infrastructure-playbook/blob/master/files/galaxy/config/user_preferences_extra_conf.yml#L59
    and then you can access those from tools and the UI
    is there anything more specific we can help?
    Nicola Soranzo
    @nsoranzo:matrix.org
    [m]
    ^ @HadleyKing
    Hadley King
    @HadleyKing
    @bgruening That link is the exact breadcrumb I needed Thanks!
    Björn Grüning
    @bgruening
    You are welcome :)
    breadcrumbs I can provide :)
    Björn Grüning
    @bgruening
    grafik.png
    is history export not allowed for collections?
    Marius
    @mvdbeek:matrix.org
    [m]
    This is the history export dialog ?
    This looks like a message from the simple list builder, which was never able to build nested collections
    Björn Grüning
    @bgruening
    I think this is the history exort dialog
    Marius
    @mvdbeek:matrix.org
    [m]
    Can you double check that and make a bigger screenshot ?
    It does say Create a collection from a list of datasets, that would be very strange if this was the history export modal
    (-> https://github.com/galaxyproject/galaxy/blob/fc9ece6b8666a6e74bc6c9f6a2029b38d32b1930/client/src/components/Collections/ListCollectionCreatorModal.js#L7)
    Björn Grüning
    @bgruening
    yes, will try, need to get back to the user
    Oleg Zharkov
    @OlegZharkov
    this is probably a stupid question, but how do I run galaxy on a different port?
    bgruening
    @bgruening:matrix.org
    [m]
    galaxy.yml
    Oleg Zharkov
    @OlegZharkov
    I see 
    uwsgi:

  # The address and port on which to listen.  By default, only listen to
  # localhost (galaxy will not be accessible over the network).  Use
  # ':8080' to listen on all available network interfaces.
  http: 127.0.0.1:8080
    bgruening
    @bgruening:matrix.org
    [m]
    https://github.com/galaxyproject/galaxy/blob/dev/lib/galaxy/config/sample/galaxy.yml.sample#L24
    Oleg Zharkov
    @OlegZharkov
    I thought it's some sort of variable that I have to export
    thanks :heart:
    Cristóbal Gallardo
    @gallardoalba:matrix.org
    [m]
    Hi everyone, a few days ago an user reported a problem while configuring Google cloud storage in Galaxy https://help.galaxyproject.org/t/help-with-configuring-google-cloud-storage/6185. If would be nice if somebody could have a look.
    luke
    @luke-c-sargent
    While I haven’t tried it in Galaxy, Google creds required by their client are a JSON often found in a user’s home dir: ~/.config/gcloud/application_default_credentials.json
    4 replies
    Jennifer Hillman-Jackson
    @jennaj
    Hi -- The gx_ commands in Rstudio (tool panel version) at .eu and .org are not functioning correctly. I noticed this late yesterday while testing for GCC training, and a user asked about it at Galaxy Help. Known issue? New? https://help.galaxyproject.org/t/error-when-importing-dataset-to-rstudio/6224
    1 reply
    Jennifer Hillman-Jackson
    @jennaj
    Hum, maybe should go in here: galaxyproject/galaxy#8899
    Local data upload is possible, and the entire session can be saved back to the original history using the "save" icon.
    To get out of rstudio, you have to close the entire tab/window, go back to the server URL, then stop the session by deleting the dataset running it. Not super obvious usage.
    1 reply
    Helena Rasche
    @hexylena:matrix.org
    [m]
    I'll look into the gx_* in R
    gx_get works for me on EU @jennaj
    gx_put as well
    image.png
    image.png
    natefoo
    @natefoo:matrix.org
    [m]
    gx_get() worked for me just now on .org
    gx_put() as well
    Jennifer Hillman-Jackson
    @jennaj
    Ok, I'll retest. Maybe the org update this morning did some magic -- or I just messed up while running through tutorials
    Doing those same tests on eu again too today
    Thanks!
    Jennifer Hillman-Jackson
    @jennaj
    Reported issue at Ghelp considered closed. They restarted in a new history/new session and things are working for them too
    Marius
    @mvdbeek:matrix.org
    [m]
    I'm confused by this, aren't you trying to build a puslar runner ?
    You wouldn't need to deal with this at all, since the client would be the pulsar runner you've linked to
    The TES job runner within Galaxy doesn't need / shouldn't build command lines for a remote job
    bgruening
    @bgruening:matrix.org
    [m]
    I guess the use case here is to submit a job to an external TES endpoint ... Not pulsar
    So any TES server
    Vipul Chhabra
    @vipulchhabra:matrix.org
    [m]
    Yeah I am trying to build runner for remote TES server
    Marius
    @mvdbeek:matrix.org
    [m]
    How's the request supposed to look like on the TES side ?
    Like, you need to stage some files and reference them, right ?
    Vipul Chhabra
    @vipulchhabra:matrix.org
    [m]
    Yeah, It will look something like this
    """{
  "name": "Task Executors",
  "description": "Demonstrates the most basic tasks.",
  "inputs": [
    {
      "url": "s3://funnel-test/test.py",
      "path": "/inputs/test.py"
    }
  ],
  "outputs": [
    {
      "url": "s3://funnel-test/output.txt",
      "path": "/outputs/hello-out.txt"
    }
  ],
  "executors": [
    {
      "image": "python",
      "command": [
        "python",
        "/inputs/test.py"
      ],
      "stdout": "/outputs/hello-out.txt"

    }
  ]
}"""
    The URL here refers to the URL of the file which needs to be staged and the path refers to the location where we want to place the files
    Marius
    @mvdbeek:matrix.org
    [m]
    OK, how do you want to get the URL ?
    Like these are input files within Galaxy, right ?