hey workflow gurus! staramr specifies species using a drop down (this is necessary to run PointFinder) - while the user could set this by changing the "default tool parameters" at pipeline invocation time, is there any way to ask for a user input parameter for the pipeline (so it shows up right at the top like other pipeline inputs) and connect this to the dropdown?
Guess we got ~ 2-3 weeks to get the user interface in, it seems doable if there's no too many unexpected things popping up
Some iuc tools are not up to date in usegalaxy.org, this makes some upgrade PR failing, would it be possible to update them (toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.7.8a+galaxy1 and toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.5.0+galaxy0). Thanks
I had misunderstood what they wanted (maybe). From "User > Workflow invocations" the outputs are listed out and drilling down to HTML output is rendered correctly. BUT I think what they want is to add in are output datasets to the "Report" function. No other outputs are fully rendered -- the report just has the workflow/tool parameters, and I think that is fine. I'll write them back with the how-to for all cases.