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    Jake Fenton
    @bocajnotnef
    Hmmm
    Jake Fenton
    @bocajnotnef
    I am copying code everywhere
    which is concerning
    Jake Fenton
    @bocajnotnef
    my attempt to put useful things in one place instead has normalize-by-median puking stdout everywhere
    WOOO
    wonder if I just hacked a way around the tests capturing stdout
    hope not
    that'd be messy to fix
    Jake Fenton
    @bocajnotnef
    getting this error: TypeError: coercing to Unicode: need string or buffer, instance found
    am confused because dropping into PDB and typing the thing it's coercing shows it's already unicode
    wait
    waaaiiit
    Jake Fenton
    @bocajnotnef
    just realized #1186 is gonna cause all kinds of fun conflicts with the compressed output pull
    WHEEE
    Jake Fenton
    @bocajnotnef
    Aaaand I just typo'd my way up to filling up ~12 build threads. Whoops.
    Jake Fenton
    @bocajnotnef
    woo gonna break all the things
    oxli/functions is so sad now...
    Jake Fenton
    @bocajnotnef
    Aaalright
    refactoring extract-partitions
    (or, starting to, anyway)
    thing 1: We scan through alll the files three times over. That's just... SIlly.
    Let's see if we can do it all at once.
    Jake Fenton
    @bocajnotnef
    just got that abund thread test failure
    Jake Fenton
    @bocajnotnef
    problem: could factor out code that checks to see if all files are of consistent format, but if I moved it it'd happen AFTER we scan through all the files, which could take a while for some datasets
    So if we want it to fail off the bat then it's not really easily refactor-able
    Alternatively, we could try promoting fasta data to fastq data, but doing that without asking seems bad
    Luiz Irber
    @luizirber
    @bocajnotnef not sure if it is cleaner, but you can use contextlib.contextmanager: https://github.com/dib-lab/khmer/compare/rfact/extract-part...rfact/extract-part_sugg