======================================================================
FAIL: tests.test_scripts.test_unique_kmers_stream_out
----------------------------------------------------------------------
Traceback (most recent call last):
File "/home/bocajnotnef/git/env/local/lib/python2.7/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/home/bocajnotnef/git/khmer/tests/test_scripts.py", line 3298, in test_unique_kmers_stream_out
assert 'Writing to stdout' in err, err
AssertionError:
|| This is the script 'unique-kmers.py' in khmer.
|| You are running khmer version 2.0-rc1+119.gf55bd1f
|| You are also using screed version 0.9
||
|| If you use this script in a publication, please cite EACH of the following:
||
|| * MR Crusoe et al., 2014. http://dx.doi.org/10.6084/m9.figshare.979190
|| * A. D\xf6ring et al. http://dx.doi.org:80/10.1186/1471-2105-9-11
|| * Irber and Brown, unpublished
||
|| Please see http://khmer.readthedocs.org/en/latest/citations.html for details.
Estimated number of unique 20-mers in -: 3950
Total estimated number of unique 20-mers: 3950
-------------------- >> begin captured stdout << ---------------------
running: unique-kmers.py in: /tmp/khmertest_rpcL1J
arguments cat /tmp/khmertest_rpcL1J/random-20-a.fa | python /home/bocajnotnef/git/khmer/tests/../scripts/unique-kmers.py -k 20 -e 0.01 --stream-out -
--------------------- >> end captured stdout << ----------------------
----------------------------------------------------------------------
Ran 572 tests in 32.963s
FAILED (failures=1)
Makefile:226: recipe for target 'test' failed
make: *** [test] Error 1
find . -iname "*.pyc" -delete