Yes, thank you for organizing everything!
@MKrumnikl I’m looking forward!!!
Hi @tischi , I'm not going to NEUBIAS. I don't think you need to mention the Elastix wrapper. I mean it's far from a "production" level, and it's intertwined within other stuff in the current repository (https://github.com/NicoKiaru/ij-utilities-wrappers). But I'm interested to have some feedback !
@tibuch @tpietzsch Related to that: Is there a simple way of creating a "copy "of a
ConverterSetup? My use-case is that I want to remove Source a and replace it by Source a , but using the same display settings for Source b as the user had for Source a. Maybe there is another way of doing that?
@maarzt I little hacked imagej-server and scijava-parallel with support for Interval type - example is in repo and branch https://github.com/kozusznik/scijava-parallel-examples/tree/intervalSerializer
I don't have an answer to the second question
@maarzt required artifacts are in our maven repository and their source codes are here: https://github.com/kozusznik/scijava-parallel-imagej-server/tree/intervalSerializer , https://github.com/kozusznik/imagej-server/tree/intervalSerializer ,
@maarzt I also created command for launching ImageJServer on HPC cluster (now, it is only prototype compatible with IT4I clusters ). Its using is demonstrated here https://github.com/kozusznik/scijava-parallel-examples/blob/runOnCluster/src/main/java/org/scijava/parallel/examples/ExampleExecuteOnCluster.java
@MLbyML There's github.com/maarzt/scijava-log-examples have a look on https://github.com/maarzt/scijava-log-examples/blob/master/src/main/java/org/scijava/log/examples/ParentPlugin.java
For an example how to have your own LoggingPanel
For an example how to have your own LoggingPanel
Hi @Lorita92_gitlab
Welcome to the imagej community! Did you try https://forum.image.sc/ ? Maybe someone else already had this question. If not it would be great if you could ask there. You can reach a larger audience and the answer will be discoverable by other users :)
Welcome to the imagej community! Did you try https://forum.image.sc/ ? Maybe someone else already had this question. If not it would be great if you could ask there. You can reach a larger audience and the answer will be discoverable by other users :)
@tibuch Could you point me ( again ) to the piece of code where you retrieve pixel values at the current mouse coordinate, to be shown in the Bdv window? I am using a pattern like this
*.nonVolatile().getSource( t, 0 ).randomAccess(); but I feel it blocks other processes. Is there maybe any way to just get the pixel values that Bdv already loaded anyway in order to show the image (instead of requesting them a second time)?
@tischi this is the overlay I use for that: https://github.com/bigdataviewer/bigdataviewer-ui-panel/blob/ebe849f4dd87e45ee34c9b37436e32bb52446a02/src/main/java/bdv/ui/panel/overlay/IntensityMouseOverOverlay.java
Regarding other options I would have to ask @tpietzsch :)
@tibuch thanks! interesting, seems like it is not necessary to explicitly ask for a
nonVolatile: https://github.com/bigdataviewer/bigdataviewer-ui-panel/blob/ebe849f4dd87e45ee34c9b37436e32bb52446a02/src/main/java/bdv/ui/panel/overlay/IntensityMouseOverOverlay.java#L133