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    Christian "Tischi" Tischer
    @tischi
    @tibuch Is there a way to programmatically set the display range min and max of a given Source just going through bdvHandle? I could not find it. I know one can do it via the BdvStackSource objects, but I think I would prefer doing it via bdvHandle in my case.
    Christian "Tischi" Tischer
    @tischi
    @tibuch @tpietzsch Related to that: Is there a simple way of creating a "copy "of a ConverterSetup? My use-case is that I want to remove Source a and replace it by Source a , but using the same display settings for Source b as the user had for Source a. Maybe there is another way of doing that?
    Jan Kožusznik
    @kozusznik
    Hello @maarzt, we agree with your suggested video call on monday 1pm.
    @maarzt I little hacked imagej-server and scijava-parallel with support for Interval type - example is in repo and branch https://github.com/kozusznik/scijava-parallel-examples/tree/intervalSerializer
    tibuch
    @tibuch
    @tischi as far as I know the display range is coupled to a source. Because you can have different ranges for different sources but display them all together in the fused mode.
    I don't have an answer to the second question
    Jan Kožusznik
    @kozusznik
    Jan Kožusznik
    @kozusznik
    @maarzt I also created command for launching ImageJServer on HPC cluster (now, it is only prototype compatible with IT4I clusters ). Its using is demonstrated here https://github.com/kozusznik/scijava-parallel-examples/blob/runOnCluster/src/main/java/org/scijava/parallel/examples/ExampleExecuteOnCluster.java
    Matthias Arzt
    @maarzt
    @kozusznik Sounds great! I will try to have a look into it before the call
    Christian "Tischi" Tischer
    @tischi
    @bogovicj @NicoKiaru Like this OK?
    image.png
    NicoKiaru
    @NicoKiaru
    :+1:, thanks!
    Jan Kožusznik
    @kozusznik
    @maarzt My skype contact is jankozusznik
    Matthias Arzt
    @maarzt
    I found it thank you
    John Bogovic
    @bogovicj
    :+1:
    Michal Krumnikl
    @MKrumnikl
    @maarzt Any troubles getting certificate for signing emails to get access to IT4I SPC ? (PM)
    Matthias Arzt
    @maarzt
    lorita
    @Lorita92_gitlab
    hello everyone! does anyone know how to open a psd file in image j? i already have downloaded jimi reader, jimi writer and jimi jar and pasted the files in the plugin area, but it doesn't work
    tibuch
    @tibuch
    Hi @Lorita92_gitlab
    Welcome to the imagej community! Did you try https://forum.image.sc/ ? Maybe someone else already had this question. If not it would be great if you could ask there. You can reach a larger audience and the answer will be discoverable by other users :)
    Christian "Tischi" Tischer
    @tischi
    @tibuch Could you point me ( again ) to the piece of code where you retrieve pixel values at the current mouse coordinate, to be shown in the Bdv window? I am using a pattern like this *.nonVolatile().getSource( t, 0 ).randomAccess(); but I feel it blocks other processes. Is there maybe any way to just get the pixel values that Bdv already loaded anyway in order to show the image (instead of requesting them a second time)?
    Regarding other options I would have to ask @tpietzsch :)
    Christian "Tischi" Tischer
    @tischi
    Christian "Tischi" Tischer
    @tischi
    @tibuch Do you have code for a scale bar in Bdv?
    tibuch
    @tibuch
    @tischi I don't.
    Florian Jug
    @fjug
    @tischi -- I'd check with Saalfeld or @tpietzsch
    tpietzsch
    @tpietzsch
    @tischi you can enable it by putting a file ~/.bdv/bigdataviewer.properties (or alternatively in the Fiji directory or something like that. I don't remember, you can check the code...)
    with content like this:
    show-scale-bar = true
    scale-bar-color = #ffffffff
    scale-bar-bg-color = #88000000
    show-scale-bar-in-movie = true
    Florian Jug
    @fjug
    Wooow… this is good to know! :)
    Christian "Tischi" Tischer
    @tischi
    @bogovicj thanks! Looks like what I need :-) @tpietzsch I guess I would only need to do what you suggested for it to be working in vanilla Fiji?! ...my current use-case is just that I need it within my java code...
    tpietzsch
    @tpietzsch
    @tischi yes
    the properties file is used to populate bdv.util.Prefs
    you can also programmatically do, e.g., Prefs.showScaleBar(true)
    tpietzsch
    @tpietzsch
    (note that this will not affect BDV windows that are already open, IIRC)
    Michal Krumnikl
    @MKrumnikl
    There is an interesting article on BBC regarding Kofola, most of you have drinked in Ostrava - http://www.bbc.com/travel/story/20190329-the-cold-war-era-drink-that-rivals-cola
    janaklimova
    @janaklimova
    There are a few words about Hackathon in our quarterly newsletter pp. 12-16. Unfortunately translated into Czech but at least you can have a look at the pictures :D https://www.it4i.cz/wp-content/uploads/2019/04/IT4I-Newsletter-Q1-2019-CZ.pdf
    John Bogovic
    @bogovicj
    :+1:
    Christian "Tischi" Tischer
    @tischi
    @tibuch @tpietzsch Is it possible to override keyboard short-cuts of the Bdv? It would also be OK for us to deactivate all default short-cuts such that we can add our own.
    tpietzsch
    @tpietzsch
    @tischi it's possible, I'll dig up an example
    tpietzsch
    @tpietzsch
    @tischi @tibuch
    "Standard" BDV reads key configurations from a file ~/.bdv/bdvkeyconfig.yaml if it exists
    You can dump a file with the default keys by uncommenting this line and running BigDataViewer.main(): https://github.com/bigdataviewer/bigdataviewer-core/blob/4d8a5e2f774942cbdb41b7ceff7c4e90bd8d102c/src/main/java/bdv/BigDataViewer.java#L722
    This is a yaml file which maps actions/behaviours to (sets of) shortcuts
    replace everything with "not mapped"
    tpietzsch
    @tpietzsch
    you cannot simply use an empty file, because if no shortcut is given for an action/behaviour, the built-in default will be used