Where communities thrive


  • Join over 1.5M+ people
  • Join over 100K+ communities
  • Free without limits
  • Create your own community
People
Repo info
Activity
    Hadrien Mary
    @hadim
    at least for few years (I can';t promise my whole life of course)
    :-D
    Curtis Rueden
    @ctrueden
    OK, so... can you transfer it to the fiji org then?
    Hadrien Mary
    @hadim
    Is the Zenodo ROi I setup ok for you ?
    Curtis Rueden
    @ctrueden
    Of course. If you need to stop supporting it, I just want to document that in the POM if/when it happens, so we can update the wiki automatically, so people's expectations are updated.
    Hadrien Mary
    @hadim
    Ok perfect.
    Curtis Rueden
    @ctrueden
    It is fine if you want to use Zenodo. I haven't personally gotten into it yet.
    I guess ultimately we may publish ROIs for all the core ImageJ stuff, but... it needs to be fully automated or we will go insane.
    Hadrien Mary
    @hadim
    I will transfer the repo tonight
    Curtis Rueden
    @ctrueden
    OK. I am trying to remember whether it will let you do it... I can't recall.
    Hadrien Mary
    @hadim
    You'll have to give some right qccess then
    access
    Yes I imagine
    Curtis Rueden
    @ctrueden
    @hadim I see from your website that you use Python a lot. It would be nice to chat about that in depth some time. Ideally in person. Perhaps at a future hackathon. :-)
    Actually, if you add me as admin for the KymographBuilder repo now, I'll pull it into fiji for you.
    I already invited you to the relevant Fiji team.
    Hadrien Mary
    @hadim
    Yes indeed. Python is what I use when I can
    Analyzing data with python/jupyter is just amazing
    I do Java because I have to :-) But I Have to a admit that IJ2 API and Java 8 make the process very smooth
    Much better than few years ago :-0
    Curtis Rueden
    @ctrueden
    @hadim KymographBuilder Jenkins job is ready.
    Hadrien Mary
    @hadim
    You are now admin
    Sure we could talk about that somedays
    If you can't backport issues to the fiji repo I'll do it tonight
    Curtis Rueden
    @ctrueden
    @hadim It looks like push access is not enough; I need admin to move it.
    Hadrien Mary
    @hadim
    @ctrueden done
    Curtis Rueden
    @ctrueden
    Thank you!
    Your testimonial! ;-) (If you don't like it, I can delete it. But these things are actually very helpful!)
    Hadrien Mary
    @hadim
    ahah
    no I like it
    Curtis Rueden
    @ctrueden
    OK, we have it! https://github.com/fiji/KymographBuilder
    You should still have admin—please let me know ASAP if not.
    Hadrien Mary
    @hadim
    Seems to be ok
    Curtis Rueden
    @ctrueden
    And the first jenkins build even passed! Whoa! (This never happens.)
    Hadrien Mary
    @hadim
    Thank for that @ctrueden
    Good
    Curtis Rueden
    @ctrueden
    And here it is in the Maven repo
    Hadrien Mary
    @hadim
    Last hing @ctrueden , I need your opinion on this
    I use a test tif file in resources https://github.com/fiji/KymographBuilder/tree/master/src/main/resources/testdata
    Which 8 Mo and make the JAR files big for nothing (at least for the end user)
    Curtis Rueden
    @ctrueden
    Umm, is it just for unit tests?
    If so, put it in src/test/resources instead.
    Hadrien Mary
    @hadim
    Well for now it's just for me
    Curtis Rueden
    @ctrueden
    Ideally you wouldn't even commit it to the git repository at all, though. It bloats the clones.
    Hadrien Mary
    @hadim
    ok
    Curtis Rueden
    @ctrueden
    There is a tool called git-annex for managing large associated binaries, but I haven't used it.
    Hadrien Mary
    @hadim
    yeah but it makes the testing very convenient
    hum ok I'll think about this
    Curtis Rueden
    @ctrueden
    If it isn't needed for automated tests either, then I would just commit to /data or something. If you really want it committed at all, as I said.
    Hadrien Mary
    @hadim
    I use it for this https://github.com/fiji/KymographBuilder/blob/master/src/main/java/fiji/plugin/kymographbuilder/KymographBuilder.java#L131