Where communities thrive


  • Join over 1.5M+ people
  • Join over 100K+ communities
  • Free without limits
  • Create your own community
People
Repo info
Activity
    Patrick Scheibe
    @halirutan
    The paper is here on pubmed or here on the site of the journal. I someone able to provide me with a preprint or a pdf? If yes, I would be glad if someone could mail it to me. My address should be available on GitHub.
    Jan Eglinger
    @imagejan

    :point_up: February 10, 2018 4:58 PM @hanslovsky wrote:

    Do we have post guidelines for the forum, in particular things like "add minimum working example", "show error log", etc?

    Something similar -- a topic template for the Issues category -- was proposed by @stelfrich three weeks ago in a staff-only post on the forum. (I just granted you Moderator permissions, @hanslovsky, so you should now be able to see it.) I think it would be good to have something like this, yes.

    Curtis Rueden
    @ctrueden
    @imagejan Thought you might be interested in the experimental discourse-etiquette plugin which leverages the Google Perspective API. I will not set it up now, but it is exciting to watch for the near future.
    Jan Eglinger
    @imagejan
    :+1:
    Philipp Hanslovsky
    @hanslovsky
    Thanks @imagejan
    amirffff
    @amirffff
    Hi guys
    can I ask a general question?
    How do you work with imageJ in order to write scripts (Jython, Macro, Java) and why?
    thanks in advance
    Gabriel Einsdorf
    @gab1one
    This should give you a start
    Ellen TA Dobson
    @etadobson
    @amirffff posted on the forum this same question - so all responses can be addressed there. ^^^ The link is pasted here for others to follow.
    Jan Eglinger
    @imagejan
    @ctrueden thanks for taking care of the forum email issue. It seems that changing the IP was successful: I can't connect to http://forum.imagej.net/ right now. I guess it's just a matter of time until the DNS server gets updated?
    Connection to http://144.92.48.175/ works...
    Curtis Rueden
    @ctrueden
    @imagejan Yes, we need to wait for the DNS change. I was just about to write that in this chat room, but you beat me to it.
    Jan Eglinger
    @imagejan
    :+1:
    Curtis Rueden
    @ctrueden
    Now the question is: will emails start working again? It is highly likely, but I'm always skeptical when it comes to email.
    Jan Eglinger
    @imagejan
    Test email to myself worked :tada:
    Curtis Rueden
    @ctrueden
    Woot!
    Jan Eglinger
    @imagejan
    ImageJ Logo Voting: unbelievable, A and B are on par now! The ImageJ logo needs to be a microscope! ;-)
    Hm, there seem to be a few mailing issues listed on sidekiq now: http://144.92.48.175/sidekiq/retries
    But I guess that's normal (?)
    Curtis Rueden
    @ctrueden
    Looks like the retries are all cleared out now.
    Hadrien Mary
    @hadim
    I confirm the emails work. Good job guys.
    Stefan Helfrich
    @stelfrich
    Thanks for fixing the email issue, @ctrueden! :beers:
    amirffff
    @amirffff
    I all I have a question
    what is the difference between fiji and imageJ1 and imageJ 2?
    especialy related to scripting
    Hadrien Mary
    @hadim
    Hello amirffff. Please try to search for a question before asking here as this chat is primarly dedicated to ImageJ development. Here two ressources that can help you understand the differences between Ij1, IJ2 and Fiji: https://imagej.net/Frequently_Asked_Questions http://forum.imagej.net/t/fiji-versus-imagej2-or-imagej/4380
    Feel free to post a question on the forum if you need more information.
    docnathandice
    @docnathandice
    i have a image of cells with scars that we have marked with a florescent stain. i need a way to count them. i am trying to tag them with the point marker set to white. can someone help me do this. i am new to this program.
    Curtis Rueden
    @ctrueden
    @docnathandice Can you please post your question on the ImageJ Forum?
    If you post a sample image, perhaps someone can advise on whether/how they can be counted automatically, as well.
    Richard Kino
    @RichardKino_twitter
    hello I am currently counting wheat endosperm cells using the cell magic wand counter tool, however after setting the scale and measurements, image j is measuring the cells and giving me area values for each cells that cannot be accurate, does anyone have any ideas how I might correct this?
    Gabriel Einsdorf
    @gab1one
    @RichardKino_twitter Can you please post your question on the ImageJ Forum?
    If you post a sample image, perhaps someone can advise on whether/how they can be counted automatically, as well. :)
    Richard Kino
    @RichardKino_twitter
    Thanks I've posted it on the forum. Any idea how long typically it takes for someone to reply? Or whether their replied to at all?
    Jan Eglinger
    @imagejan
    @RichardKino_twitter anything between 30 sec and several months, depending on how well you formulated your question and whether you include a catching example image ;-)
    Patrick Scheibe
    @halirutan
    @RichardKino_twitter Putting description-text as a code-block is the first this that makes a question hard to read.
    Jan Eglinger
    @imagejan
    @halirutan I just edited it to improve the formatting.
    For reference: here's the forum question.
    Patrick Scheibe
    @halirutan
    In your image, what exactly are the cells you try to measure?
    Because in the second image, the regions that are marked with red seem to be the darker regions that are separated by the slightly brighter boundaries.
    However, you said you stained the cells which usually means that they should be the brightest things. @RichardKino_twitter
    Jan Eglinger
    @imagejan
    @halirutan please let's continue the discussion on the forum. It's more discoverable there, when others search for similar things...
    Richard Kino
    @RichardKino_twitter
    apologies I just saw your response @halirutan
    @halirutan I am trying to measure the endosperm cells which as you mention are the darker regions separated by the slightly brighter boundaries. These cell walls contain small amounts of mixed linkage glycans and arabinoxylan which don't stain brightly but this stain has a quick application and allows for the overall cell morphology to be viewed. The threshold tool on image J is also quite good at removing other intracellular bodies that I don't want
    Patrick Scheibe
    @halirutan
    @RichardKino_twitter You should include this information in the question as it might not be obvious for readers. Furthermore, it would be good if you included the original image and not the screenshot.
    Richard Kino
    @RichardKino_twitter
    @imagejan And thank you Jan for editing my original post, a lot easier to read!
    @halirutan Thanks for the advice, that's a good point! I will edit the post and also try to attach and upload the original image.
    Richard Kino
    @RichardKino_twitter
    @halirutan I have edited the post. Thanks!