Where communities thrive


  • Join over 1.5M+ people
  • Join over 100K+ communities
  • Free without limits
  • Create your own community
People
Repo info
Activity
    Curtis Rueden
    @ctrueden
    Must have been a lot of work to create.
    Curtis Rueden
    @ctrueden
    And I got sucked into reading that "Trouble at the lab" Economist article for at least 30 minutes. :-)
    Kevin Mader
    @kmader
    @ctrueden oh great it was more to just show the live coding + presentation ability, unfortunately no scijava, but we'll definitely add some in. definitely let me know what comes out of the hackathon. the js stuff does seem to be dominating the UI world and trying to keep up with react, vue, meteor, angular is a small headache, but can deliver really cool results. as my last bit of list spam, with webassembly and vue we could package some radiology ML code into entirely browser-based analysis (bit.ly/deepradnet), apparently transpiling java to webassembly doesn't work so well yet though
    Hadrien Mary
    @hadim
    @imagejan @ctrueden I just tested sjjk 0.6.0 locally on my system and it works well + all the CI builds are green so I am going to merge. If an urgent fix is needed I will be available next week to help if needed.
    CI builds started, packages should be uploaded to Anaconda within few hours.
    Curtis Rueden
    @ctrueden
    Thanks @hadim!
    (just)Tomas
    @nightdismay_twitter
    Hello everyone, could anyone help me with one simple task regarding ImageJ?
    I'm biochemist so I have really low experience with graphic/desgin, but I got one important task.. I need to know how to export all XY coordinates of an object.. not just outline, but whole object.. can anyone help with that?
    Josh Moore
    @joshmoore
    hi @nightdismay_twitter You might try asking your question on http://forum.imagej.net/ (perhaps looking for similar ones first).
    Curtis Rueden
    @ctrueden
    @imagejan It seems your logo is the winner! Congratulations. The question is: how should we proceed? There was some concern over colors. I think we should create a couple of versions with different color schemes, and with/without white outline. What do you think?
    Hadrien Mary
    @hadim
    Congrats @imagejan ! I agree with creating a couple of versions with different colors.
    Kyle I S Harrington
    @kephale
    woohoo! nice @imagejan!!
    Philipp Hanslovsky
    @hanslovsky
    Congrats @imagejan !
    Jan Eglinger
    @imagejan
    :smile: :tada: thanks all for your support!
    @ctrueden yes, color schemes that fit well to bright and dark background, as well as outlined versions would be good. Thanks a lot to @awalter17 for updating my initial script to the latest imglib-roi usage. Now we'd need to generate outlines and fill with different colors ideally from this script. Also, can we use the latest imglib-roi in Jupyter/Binder notebooks already? :)
    Jan Eglinger
    @imagejan
    And we might want something nice corresponding to Fiji_Logo_3D.js for the new logo, but displayed in BDV and SciView (of course)
    Kyle I S Harrington
    @kephale
    oo @imagejan feel free to poke us about that
    Jan Eglinger
    @imagejan
    I will try to play with different logo versions on the weekend, and then ask you for opinions/improvements, @ctrueden @kephale
    Curtis Rueden
    @ctrueden
    Sounds good, thanks @imagejan.
    Stefan Helfrich
    @stelfrich
    Uhm. Did ij-1.51v-SNAPSHOT.jar get on the ImageJ update site intentionally, @ctrueden?
    Jan Eglinger
    @imagejan
    :astonished: @stelfrich it is there, but my updater doesn't pick it up. Yours?
    Stefan Helfrich
    @stelfrich
    Mine did, this morning.. @imagejan
    Ignacio Arganda-Carreras
    @iarganda
    @imagejan mine too
    Jan Eglinger
    @imagejan
    That's strange, I still don't see it:
    blob
    Curtis Rueden
    @ctrueden
    @stelfrich It was not exactly intentional, but I needed to fix the ImageJA build.
    So I pushed imagej/ImageJA@fc5a1a4.
    I guess Upload-IJ1-into-ImageJ got triggered by the push, although I didn't realize that would happen.
    Stefan Helfrich
    @stelfrich
    Interesting
    Curtis Rueden
    @ctrueden
    I double checked, and indeed all pushes to master of ImageJA trigger that job. This makes sense when only release versions are pushed to that repo.
    Stefan Helfrich
    @stelfrich
    In that case, yes..
    Curtis Rueden
    @ctrueden
    @imagejan Is ij-1.51u.jar a shadow from an update site?
    Or are you behind a crazy network, like we were in Lisbon?
    Jan Eglinger
    @imagejan
    No, the updater says I get it from the ImageJ update site, and I also tried with a different Fiji installation on a different Windows computer.
    It's true I am behind a crazy network firewall, though...
    But usual updates work as expected, with a proxy configured in ImageJ
    Curtis Rueden
    @ctrueden
    @imagejan When you browse http://update.imagej.net/jars/ do you see the new 1.51v-SNAPSHOT artifact?
    Jan Eglinger
    @imagejan
    yes
    Curtis Rueden
    @ctrueden
    And at http://update.imagej.net/ you see db.xml.gz with "01-Mar-2018 11:04 66K "?
    (Not sure what Apache does for time zones, but it should certainly be March 1)
    Jan Eglinger
    @imagejan
    yes, also
    hm
    I'll try on yet another computer, just to make sure...
    Curtis Rueden
    @ctrueden
    The only time I've seen this problem was in Lisbon, when the local network was caching a very stale version of the db.xml.gz file.
    If you are running Java 1.8.0_101 or later, you could try changing http to https in your manage update site dialog.
    Jan Eglinger
    @imagejan
    That is strange: I saw the same thing (1.51u being reported as up-to-date) on two other machines (one Windows 7, one Mac OSX), the Mac installation even was at 1.51s still and got updated to 1.51u...
    Switching to https triggered the update to 1.51v-SNAPSHOT on my debugging installation running with Java-1.8.0_144
    The others a running with the bundled 1.8.0_66 I think, and I didn't test https there.
    Not that is would be important for me, but it's a conundrum indeed.
    Curtis Rueden
    @ctrueden
    Since the switch to HTTPS works, I expect the problem is similar to Lisbon: stale HTTP cache of the network. We will avoid it in future by migrating everything to HTTPS.
    Jan Eglinger
    @imagejan
    Is there a way to display an image with a specific color map in a Jupyter notebook? If yes, is there some example somewhere in imagej/tutorials?