Hello everyone, I'm a member of the tomancak lab now. Since one and a halve weeks now!
@ctrueden / @hinerm Could you please create a new update site https://sites.imagej.net/TomancakLab/ and give access rights to me "Maarzt" and @xulman "xulman"
setBatchMode(true): the output images are never created or made available to the user in a way they can be readily accessed in macro code. My guess is that the output parameter processing is not occurring, or is occurring but the data are not 'presented' in a macro accessible way. In a batch mode macro images can normally be accessed with
selectImage(), but no images are available to be selected. Macros run fine with
@mdoube Thanks for the report, and sorry to hear of the trouble. I would call this a bug. Regarding whether it's "known": maybe years ago I could have said yes, there is some quirk of the IJ<->IJ2 synchronization with batch mode, but in 2022 I cannot recall, so I'll say no, it's not known. Whether it can be fixed: would need to dig to see whether it's easily fixable, or more systemic. Sorry I can't shed more light on it off the top of my head.
I tried reading the thread you linked, but it's >70 posts long and the last discussion is in Jython, which has diverged from the macro issue. I scanned the entire thread searching for
setBatchMode but couldn't find any post with that command. Is there a particular post number you can link me to that would illustrate the issue?
If you file an issue in imagej-legacy I can probably spend some time digging on Friday, May 27.
If you file an issue in imagej-legacy I can probably spend some time digging on Friday, May 27
Hello, i am having problems opening my images. They do not appear as merged, and the following text opens each time with them:
(Fiji Is Just) ImageJ 2.1.0/1.52v; Java 1.8.0_66 [64-bit]; Windows 10 10.0; 90MB of 49027MB (<1%)
java.lang.NoClassDefFoundError: Could not initialize class com.jgoodies.forms.layout.FormSpecs
ETC.... (see image)
Does anyone know how i can fix this? Thank you
Interestingly, I get a
HeadlessException in only one of the two tests, and the other one is failing:
Error: Failures: Error: BackgroundSubtractionTest.testEqualParameters:75 Pixel values differ on coordinate (0, 0, 0, 0, 0), expected: 1904 actual: 158 Error: Errors: Error: BackgroundSubtractionTest.testUnequalParameters:82 » Headless
IntegerType! I misread as
Which is closed and merged. @gselzer You actually reviewed that PR! imagej/imagej-common#82
Yeah, I thought it was fixed already. I just couldn't find the PR... :sweat_smile:
IntegerToIntTypeconverter could handle that conversion above
Hey Everyone, Can someone advise or give any lead to this problem?
I want to extract the geometry of the crystals and matrix as can be seen in the image. I would like to import the crystal structure and matrix data in Abaqus software for doing FEM analysis. Can anybody please provide me an idea, of how to do that? Because this software accepts geometries only such as
. dwg. dxg, .step. .stl, .iges, AutoCAD file, not an image file.
I have posted on forum two weeks before but still not answers received. Here is the complete link to problem at the forum -