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    Josh Adam
    @joshsadam
    HI
    Aaron Petkau
    @apetkau
    hello all
    Tom Matthews
    @tom114
    everyone start "hacking"
    Damion Dooley
    @Public-Health-Bioinformatics
    hiho
    Josh Adam
    @joshsadam
    Inside mysql (/usr/local/Cellar/mysql/5../)
    Create file my.cnf with:
    [mysqld]
    
    sql_mode=
    Tom Matthews
    @tom114
    there may be a my.cnf already on your system somewhere
    might be worth it to do a locate first
    Damion Dooley
    @Public-Health-Bioinformatics
    hey josh what's the linelist code folder path in gitlab https://irida.corefacility.ca/irida/
    Josh Adam
    @joshsadam
    src/main/webapp/resources/js/pages/projects/linelist
    Josh Adam
    @joshsadam
    phac-nml/irida#25
    Peter Kruczkiewicz
    @peterk87
    how do I get a guest network access voucher? I'm connected to staff on my work surface but can't access the share.corefacility.ca/share site
    Jeffrey Thiessen
    @JeffreyThiessen
    :wave:
    Aaron Petkau
    @apetkau
    docker exec -it [ID] bash -c "stty cols $COLUMNS rows $LINES && bash"
    ^ that article was written before clojure.spec existed. https://clojure.org/about/spec
    Aaron Petkau
    @apetkau
    @JeffreyThiessen try this https://stackoverflow.com/a/29754018
    Geoff Winsor
    @glwinsor
    @apetkau @tom114 @peterk87 I added an issue to GitHub explaining some problems getting the dynamic source parameters working phac-nml/irida#44
    Dan Fornika
    @dfornika
    If anyone runs into a problem with running Galaxy in a Docker container on macOS where conda packages fail to install, take a look at this comment: https://github.com/conda/conda/issues/6514#issuecomment-359547450
    You may need to create a case-sensitive APFS partition using Disk Utility
    This is how I launch my galaxy docker container:
    docker run -d -p 48888:80 -v /Users/dfornika/irida/:/Users/dfornika/irida/ -v /Volumes/Docker/phacnml/galaxy-irida-17.01/export/:/export/ -e "ENABLE_TTS_INSTALL=True" phacnml/galaxy-irida-17.01
    ...the /Volumes/Docker directory is mounted to the case-sensitive partition.
    Geoff Winsor
    @glwinsor
    @dfornika Thanks!
    Peter Kruczkiewicz
    @peterk87
    I get an error on that page...
    Peter Kruczkiewicz
    @peterk87
    @Public-Health-Bioinformatics @dfornika https://github.com/arachne-framework/aristotle "An RDF/OWL library for Clojure, providing a data-oriented wrapper for Apache Jena."
    Peter Kruczkiewicz
    @peterk87
    @Public-Health-Bioinformatics this might help getting setup quickly https://sekao.net/lightmod/
    Damion Dooley
    @Public-Health-Bioinformatics
    @tom114 etc. Here's a doc for gathering specs for IRIDA ontology-driven controlled vocabulary service: https://docs.google.com/document/d/1tQhY0xt9vN9n-KAif_Rm4RyDL1xoPdMbexs5N7U5-2Q/edit?usp=sharing