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GO enrichment with python -- pandas meets networkx
Nov 11 2017 04:17
Hello Jan! I'm trying to write the GO obo graph generated by networkx to graphml
and I'm running into a problem having to do with the way the graph is rooted
Nov 11 2017 04:24
how would i go about getting just one of the subgraphs?
did you add the O.graph attribute? It doesn't look like nx.DiGraphs come with an nx.DiGraph.graph ?
Nov 11 2017 04:32
and what direction do the edges point after you do O.reverse() towards the root or towards the leaves? I think towards the root, right?
actually looks like towards the edges?
Nov 11 2017 04:58
Okay, I think I got the first part
Check out GO:
Kind of funny looking!
I wonder which is which