These are chat archives for nellore/rail

8th
Jan 2018
Candace Liu
@cliu72
Jan 08 2018 21:51
Hi again! I am trying to incorporate Rail into MultiQC (http://multiqc.info/), a cool tool that aggregates summary statistics from different software into a single HTML report. To do so, MultiQC parses through the output for each tool. Is there an output option for Rail that includes summary statistics such as the number of reads unmapped and multimapped? I know I can calculate these using counts.tsv.gz, but MultiQC tries to avoid this kind of calculation as it may have a huge impact on processing time. If it doesn't already exist, such a file may be useful for future releases - just a suggestion. Thanks!